Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23487 | 3' | -56.4 | NC_005259.1 | + | 10493 | 0.66 | 0.774267 |
Target: 5'- gUCGugGuuguUGGgGUUGuCCGGCACggGCCa -3' miRNA: 3'- -AGCugCc---GCUgCAACuGGCCGUG--UGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 47802 | 0.66 | 0.774267 |
Target: 5'- cCGACGGUGAguCGcgaGACCucgcgGGC-CACCg -3' miRNA: 3'- aGCUGCCGCU--GCaa-CUGG-----CCGuGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 1237 | 0.66 | 0.774267 |
Target: 5'- -gGACGGCuGCaa-GACCGGCcucgGCAUCa -3' miRNA: 3'- agCUGCCGcUGcaaCUGGCCG----UGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 19732 | 0.66 | 0.76747 |
Target: 5'- aUCGACGGgGACuaGUUGACUuacccgacacaugcgGGUAaguucauCACCa -3' miRNA: 3'- -AGCUGCCgCUG--CAACUGG---------------CCGU-------GUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 23744 | 0.66 | 0.764537 |
Target: 5'- -gGACGGCGAccccgacgcccCGcaGACCGGC-C-CCa -3' miRNA: 3'- agCUGCCGCU-----------GCaaCUGGCCGuGuGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 42946 | 0.66 | 0.764537 |
Target: 5'- cCGugGGCGAggccgcCGUUGucgaaCGGgAUGCCg -3' miRNA: 3'- aGCugCCGCU------GCAACug---GCCgUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 27827 | 0.66 | 0.763557 |
Target: 5'- cUCGACuucugcGCGAgGUaGGCCGcgaggucGCGCGCCg -3' miRNA: 3'- -AGCUGc-----CGCUgCAaCUGGC-------CGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 42507 | 0.66 | 0.758638 |
Target: 5'- cCGGCGGUGugGccagcagccguCCGGCcccgauggGCACCg -3' miRNA: 3'- aGCUGCCGCugCaacu-------GGCCG--------UGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 39761 | 0.66 | 0.755673 |
Target: 5'- gCGGCaGCaGCGgcagccugcugcuggUGAUCGGUGCGCCg -3' miRNA: 3'- aGCUGcCGcUGCa--------------ACUGGCCGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 13117 | 0.66 | 0.754682 |
Target: 5'- cUCGGCGGCuAC---GACCaGCGCACg -3' miRNA: 3'- -AGCUGCCGcUGcaaCUGGcCGUGUGg -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 20588 | 0.66 | 0.74471 |
Target: 5'- aCGAcCGGUGGaagucgGACuaugCGGCGCACCg -3' miRNA: 3'- aGCU-GCCGCUgcaa--CUG----GCCGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 22827 | 0.66 | 0.74471 |
Target: 5'- gUGACuGCGuCGUgcUGGcCCGGCcCACCc -3' miRNA: 3'- aGCUGcCGCuGCA--ACU-GGCCGuGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 49645 | 0.66 | 0.74471 |
Target: 5'- gCGuCGGCGAUGgcGGCCucgauaCGCGCCu -3' miRNA: 3'- aGCuGCCGCUGCaaCUGGcc----GUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 31277 | 0.66 | 0.734633 |
Target: 5'- -aGGCGGUGGCGagaucUUGcCCGGUcuGCGCa -3' miRNA: 3'- agCUGCCGCUGC-----AACuGGCCG--UGUGg -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 24187 | 0.67 | 0.724462 |
Target: 5'- -gGugGGCGAgaucGACCGGguCAUCg -3' miRNA: 3'- agCugCCGCUgcaaCUGGCCguGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 43728 | 0.67 | 0.72344 |
Target: 5'- gUCGAUGGCGGCcaUGccgccgaGCCGGgcaACAUCg -3' miRNA: 3'- -AGCUGCCGCUGcaAC-------UGGCCg--UGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 60649 | 0.67 | 0.714205 |
Target: 5'- uUCGACGGUGAUuucggGGCCaugacGCACGCg -3' miRNA: 3'- -AGCUGCCGCUGcaa--CUGGc----CGUGUGg -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 13230 | 0.67 | 0.714205 |
Target: 5'- cUCGAcCGGCcacCGUgagGGCCGaGCAC-CCg -3' miRNA: 3'- -AGCU-GCCGcu-GCAa--CUGGC-CGUGuGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 159 | 0.67 | 0.714205 |
Target: 5'- cUCGccCGGCGGgGU---CCGGCACcACCg -3' miRNA: 3'- -AGCu-GCCGCUgCAacuGGCCGUG-UGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 47250 | 0.67 | 0.703873 |
Target: 5'- gUCGAccagcgcuCGGUGACGcguuCCaGCGCACCg -3' miRNA: 3'- -AGCU--------GCCGCUGCaacuGGcCGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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