miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 53626 0.68 0.630289
Target:  5'- gUCGAgCGGUGcCGUUGGCCGcuuccuGCACguuguacggGCCg -3'
miRNA:   3'- -AGCU-GCCGCuGCAACUGGC------CGUG---------UGG- -5'
23487 3' -56.4 NC_005259.1 + 53460 0.69 0.556728
Target:  5'- aCGGCGGCuggcuCGUcGuCCGGCcCGCCg -3'
miRNA:   3'- aGCUGCCGcu---GCAaCuGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 52565 0.67 0.700761
Target:  5'- cCGACauGGuCGACcg-GACCGGCcugagcgucgccgaGCACCa -3'
miRNA:   3'- aGCUG--CC-GCUGcaaCUGGCCG--------------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 51351 0.7 0.494722
Target:  5'- cUCGGauaugccCGGUGGC----ACCGGCACACCg -3'
miRNA:   3'- -AGCU-------GCCGCUGcaacUGGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 51101 0.68 0.60914
Target:  5'- aCGAgGGCGGgaucUGuCCGGCAgGCCa -3'
miRNA:   3'- aGCUgCCGCUgca-ACuGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 49645 0.66 0.74471
Target:  5'- gCGuCGGCGAUGgcGGCCucgauaCGCGCCu -3'
miRNA:   3'- aGCuGCCGCUGCaaCUGGcc----GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 49566 0.69 0.588066
Target:  5'- uUCGuCGGuCGugGccaGACCGGCgggcggggucaGCACCu -3'
miRNA:   3'- -AGCuGCC-GCugCaa-CUGGCCG-----------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 47951 0.76 0.250887
Target:  5'- aCGGCGGUGcCGaUGGCCGcCGCGCCg -3'
miRNA:   3'- aGCUGCCGCuGCaACUGGCcGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 47802 0.66 0.774267
Target:  5'- cCGACGGUGAguCGcgaGACCucgcgGGC-CACCg -3'
miRNA:   3'- aGCUGCCGCU--GCaa-CUGG-----CCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 47250 0.67 0.703873
Target:  5'- gUCGAccagcgcuCGGUGACGcguuCCaGCGCACCg -3'
miRNA:   3'- -AGCU--------GCCGCUGCaacuGGcCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 46182 0.67 0.693477
Target:  5'- -gGGCGcGuCGAUGUUGAUgGGCACcucuuugggaACCg -3'
miRNA:   3'- agCUGC-C-GCUGCAACUGgCCGUG----------UGG- -5'
23487 3' -56.4 NC_005259.1 + 44559 0.68 0.651442
Target:  5'- cCGGCaGGCaGCGcgccGACCGGCAgGCUc -3'
miRNA:   3'- aGCUG-CCGcUGCaa--CUGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 44491 0.7 0.540207
Target:  5'- -aGuuGGUGACGUaGACCGGggugcccuggccaccCACGCCg -3'
miRNA:   3'- agCugCCGCUGCAaCUGGCC---------------GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 44406 0.71 0.48583
Target:  5'- aCGuCGGUGccCGccUGACCGGCAgCGCCg -3'
miRNA:   3'- aGCuGCCGCu-GCa-ACUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 43728 0.67 0.72344
Target:  5'- gUCGAUGGCGGCcaUGccgccgaGCCGGgcaACAUCg -3'
miRNA:   3'- -AGCUGCCGCUGcaAC-------UGGCCg--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43660 0.75 0.29763
Target:  5'- cCGACGGUGuCGUUG-CCGauCACACCg -3'
miRNA:   3'- aGCUGCCGCuGCAACuGGCc-GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43612 0.68 0.60914
Target:  5'- aCGAUGGCccCGaUGAUCGGCACcugagacacACCa -3'
miRNA:   3'- aGCUGCCGcuGCaACUGGCCGUG---------UGG- -5'
23487 3' -56.4 NC_005259.1 + 43416 0.68 0.61971
Target:  5'- cUCGGCGGCGGuuuccuCGcucGACUGGCuGCGCUc -3'
miRNA:   3'- -AGCUGCCGCU------GCaa-CUGGCCG-UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43197 0.71 0.447282
Target:  5'- cUCGGCGGCGAUGUcGAcgcCCGcCugACCc -3'
miRNA:   3'- -AGCUGCCGCUGCAaCU---GGCcGugUGG- -5'
23487 3' -56.4 NC_005259.1 + 42946 0.66 0.764537
Target:  5'- cCGugGGCGAggccgcCGUUGucgaaCGGgAUGCCg -3'
miRNA:   3'- aGCugCCGCU------GCAACug---GCCgUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.