miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 56235 0.67 0.81517
Target:  5'- cGUCgcCGCCGAccacguUGGGAUCG-GC-GGCCu -3'
miRNA:   3'- -CGGa-GCGGCU------ACUUUAGCuCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 56024 0.71 0.542656
Target:  5'- cCCUCGCCGGgcgGGAcuuccUCGGGC-GGCUg -3'
miRNA:   3'- cGGAGCGGCUa--CUUu----AGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 55880 0.7 0.62888
Target:  5'- cGCCUCGCCccGAccucgGggGUCGcGCcgGGGUCg -3'
miRNA:   3'- -CGGAGCGG--CUa----CuuUAGCuCG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 55703 0.74 0.394644
Target:  5'- aGCCUCGuuGAUGGccgCGAGCAccucGCCc -3'
miRNA:   3'- -CGGAGCggCUACUuuaGCUCGUc---CGG- -5'
23515 5' -54 NC_005259.1 + 55433 0.67 0.776845
Target:  5'- aGCCgacgaCGCCGAcGAAcgCGuacaGGGCCa -3'
miRNA:   3'- -CGGa----GCGGCUaCUUuaGCucg-UCCGG- -5'
23515 5' -54 NC_005259.1 + 55124 0.68 0.756761
Target:  5'- aCCggcUGCCG-UGc---CGAGCAGGCCg -3'
miRNA:   3'- cGGa--GCGGCuACuuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 54480 0.68 0.756761
Target:  5'- aGCCauccCGCCGAggGucAUCG-GCGGGCa -3'
miRNA:   3'- -CGGa---GCGGCUa-CuuUAGCuCGUCCGg -5'
23515 5' -54 NC_005259.1 + 53938 0.7 0.654987
Target:  5'- gGCgUCGaccagcguuucccacCCGGUGAAcaugGUC-AGCAGGCCg -3'
miRNA:   3'- -CGgAGC---------------GGCUACUU----UAGcUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 53606 0.69 0.672333
Target:  5'- -gCUCGUCGGggucagcaGgcGUCGAGCGGuGCCg -3'
miRNA:   3'- cgGAGCGGCUa-------CuuUAGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 52147 0.68 0.72573
Target:  5'- aCCUCGCCGAgg----CaGGCAGcGCCg -3'
miRNA:   3'- cGGAGCGGCUacuuuaGcUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 51616 0.73 0.449906
Target:  5'- cCCUCGCCGGUccacacGAGGUCGucggagcGGUAGGCg -3'
miRNA:   3'- cGGAGCGGCUA------CUUUAGC-------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 51395 0.77 0.254592
Target:  5'- cGCCccacguguucacaUCGCCGAggggccgguUGAGGUCuuGGGCGGGCCa -3'
miRNA:   3'- -CGG-------------AGCGGCU---------ACUUUAG--CUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 51045 0.68 0.72573
Target:  5'- gGCacgCGCCauccuUGAaccAAUCGAGCAGcGCCu -3'
miRNA:   3'- -CGga-GCGGcu---ACU---UUAGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 50218 0.68 0.756761
Target:  5'- cGCCUCGUcaaucuCGAUccGAGcgCGGGCGcggaucguGGCCa -3'
miRNA:   3'- -CGGAGCG------GCUA--CUUuaGCUCGU--------CCGG- -5'
23515 5' -54 NC_005259.1 + 49692 0.71 0.574687
Target:  5'- gGCCUCGCgcucgcuguCGGUGAGAUCcGgcagauauucGGCGGGCg -3'
miRNA:   3'- -CGGAGCG---------GCUACUUUAG-C----------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 48631 0.71 0.553274
Target:  5'- uGCCUCGCCGA-GA---CGGGCu-GCCa -3'
miRNA:   3'- -CGGAGCGGCUaCUuuaGCUCGucCGG- -5'
23515 5' -54 NC_005259.1 + 47923 0.67 0.786672
Target:  5'- gGCgUCGCCGAggcccugGAAGcCGAugacgGCGGuGCCg -3'
miRNA:   3'- -CGgAGCGGCUa------CUUUaGCU-----CGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 46973 0.7 0.596284
Target:  5'- gGCCacgcCGCCGAUGA--UCGGGCcgaGGGUg -3'
miRNA:   3'- -CGGa---GCGGCUACUuuAGCUCG---UCCGg -5'
23515 5' -54 NC_005259.1 + 45850 0.7 0.596284
Target:  5'- aCCgggGCCGGUGGGAcCGGGCAuGCCg -3'
miRNA:   3'- cGGag-CGGCUACUUUaGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 45514 0.7 0.624527
Target:  5'- gGCCaccgCGCCGGUGuuGgccgccguggcugCGAGCGGGUUg -3'
miRNA:   3'- -CGGa---GCGGCUACuuUa------------GCUCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.