miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 74689 0.66 0.760891
Target:  5'- cCGCGCGGGagcUGGCCGCCgCgcggGCg- -3'
miRNA:   3'- -GCGCGUCUgc-ACUGGCGGgGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 15248 0.66 0.732331
Target:  5'- cCGCucGCAGugGgccgcGAUCGCCCCggcgGCg- -3'
miRNA:   3'- -GCG--CGUCugCa----CUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 134970 0.66 0.731365
Target:  5'- gCGaCGCAGACGgcgagGACggggccgccggggCGCCCCUgGCg- -3'
miRNA:   3'- -GC-GCGUCUGCa----CUG-------------GCGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 134540 1.09 0.001292
Target:  5'- gCGCGCAGACGUGACCGCCCCUUGCUGg -3'
miRNA:   3'- -GCGCGUCUGCACUGGCGGGGAACGAC- -5'
23558 5' -59.5 NC_005261.1 + 132697 0.66 0.75147
Target:  5'- cCGCGUGGcCGUGcCCGUCCCg-GCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 86065 0.66 0.75147
Target:  5'- gGCGCGGuACGUGGCCugcaugauGCUCCgcGCg- -3'
miRNA:   3'- gCGCGUC-UGCACUGG--------CGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 104686 0.66 0.75147
Target:  5'- aGCGCcuGGGCc--ACCGCCCCgaagagcgGCUGg -3'
miRNA:   3'- gCGCG--UCUGcacUGGCGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 89419 0.66 0.750522
Target:  5'- gGCGCGuGCGcGGCCGCcgggcuccccgcgCCCgccgUGCUGg -3'
miRNA:   3'- gCGCGUcUGCaCUGGCG-------------GGGa---ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 50019 0.66 0.741947
Target:  5'- gCGCGCGGGCGcccaGCCGCCgCgcgacggUGCa- -3'
miRNA:   3'- -GCGCGUCUGCac--UGGCGGgGa------ACGac -5'
23558 5' -59.5 NC_005261.1 + 42212 0.66 0.732331
Target:  5'- cCGCGCGGGCGcc-CCGCCgCgaGCUc -3'
miRNA:   3'- -GCGCGUCUGCacuGGCGGgGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 20051 0.66 0.732331
Target:  5'- cCG-GCGG-UGUGACCuccaGCCCCUUgucGCUGa -3'
miRNA:   3'- -GCgCGUCuGCACUGG----CGGGGAA---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 34684 0.66 0.741947
Target:  5'- gCGCGCu-GCGUGACgguggGCCCCUcGCa- -3'
miRNA:   3'- -GCGCGucUGCACUGg----CGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 31057 0.66 0.760891
Target:  5'- aGCGCGG-CGggaGCCGCCgCUgcccgcccgcgUGCUGg -3'
miRNA:   3'- gCGCGUCuGCac-UGGCGGgGA-----------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 131693 0.66 0.732331
Target:  5'- gCGCGCGG-CGcugGACCGCCUCgagaGCc- -3'
miRNA:   3'- -GCGCGUCuGCa--CUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 64920 0.66 0.760891
Target:  5'- aGCGCGG-CGUGcuccugcucGCCGCCCagggGCg- -3'
miRNA:   3'- gCGCGUCuGCAC---------UGGCGGGgaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 82454 0.66 0.741947
Target:  5'- cCGCGCcGcCGUuGCCGCCCCcgGCc- -3'
miRNA:   3'- -GCGCGuCuGCAcUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 95306 0.66 0.732331
Target:  5'- gGCGCAGACG-GACUGCgacCCCUa---- -3'
miRNA:   3'- gCGCGUCUGCaCUGGCG---GGGAacgac -5'
23558 5' -59.5 NC_005261.1 + 44724 0.66 0.732331
Target:  5'- gCGCGCAgGGCGcUGcaGCUggGCCCCgaGCUGc -3'
miRNA:   3'- -GCGCGU-CUGC-AC--UGG--CGGGGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 49236 0.66 0.760891
Target:  5'- gCGCGCAGGuc-GGCCGCCgCCgcgGCg- -3'
miRNA:   3'- -GCGCGUCUgcaCUGGCGG-GGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 12332 0.66 0.75147
Target:  5'- gCGCGCuuggccGGCGcGGCCGCCgCCgcgGCg- -3'
miRNA:   3'- -GCGCGu-----CUGCaCUGGCGG-GGaa-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.