Results 1 - 20 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 35514 | 0.66 | 0.854601 |
Target: 5'- -cCGCuGgcaGCGGcauCGGCGGCAACa- -3' miRNA: 3'- aaGCGuCag-CGCCu--GCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 12345 | 0.66 | 0.854601 |
Target: 5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3' miRNA: 3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 39334 | 0.66 | 0.854601 |
Target: 5'- -gCGCcGcCGCGGccaagcugcgcGCGGCGGCAGCc- -3' miRNA: 3'- aaGCGuCaGCGCC-----------UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 117020 | 0.66 | 0.854601 |
Target: 5'- -cCGCcGUCGCGGcCGGgGcCAGCg- -3' miRNA: 3'- aaGCGuCAGCGCCuGCCgCuGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 53653 | 0.66 | 0.854601 |
Target: 5'- aUCGCAGgcggccuggcCGCGGgucGCGGCcucGACAGCg- -3' miRNA: 3'- aAGCGUCa---------GCGCC---UGCCG---CUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 76315 | 0.66 | 0.853816 |
Target: 5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3' miRNA: 3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 52840 | 0.66 | 0.84986 |
Target: 5'- cUCGCGGgCGCcuaccagaagcccgaGGGCGGCGGCGcgaACa- -3' miRNA: 3'- aAGCGUCaGCG---------------CCUGCCGCUGU---UGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 35979 | 0.66 | 0.84666 |
Target: 5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3' miRNA: 3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 5817 | 0.66 | 0.84666 |
Target: 5'- --aGCAGgggugCGCGGGCcaggcgucGGCGGCGGCc- -3' miRNA: 3'- aagCGUCa----GCGCCUG--------CCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 3592 | 0.66 | 0.84666 |
Target: 5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3' miRNA: 3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 122342 | 0.66 | 0.84666 |
Target: 5'- cUCGCAGagcUCGCcuGGCGGCcGCGGCUc -3' miRNA: 3'- aAGCGUC---AGCGc-CUGCCGcUGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 108109 | 0.66 | 0.84666 |
Target: 5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3' miRNA: 3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 93418 | 0.66 | 0.84666 |
Target: 5'- -cUGCGGcUGCGGcuGCGGCuGCGGCUGc -3' miRNA: 3'- aaGCGUCaGCGCC--UGCCGcUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 44338 | 0.66 | 0.84666 |
Target: 5'- -cCGCAGUCGC---UGGCGACcgcgcuGCUGa -3' miRNA: 3'- aaGCGUCAGCGccuGCCGCUGu-----UGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 121772 | 0.66 | 0.84666 |
Target: 5'- -gCGCGGUgggguggcCGCGGcCGGCGG--GCUGg -3' miRNA: 3'- aaGCGUCA--------GCGCCuGCCGCUguUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 122440 | 0.66 | 0.84666 |
Target: 5'- -gCGCuGgccgCGCGGGCGGCGcccgcCAGCg- -3' miRNA: 3'- aaGCGuCa---GCGCCUGCCGCu----GUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 90544 | 0.66 | 0.84666 |
Target: 5'- -aCGCGGcgcCGCGGGCGGCcgu-GCUGc -3' miRNA: 3'- aaGCGUCa--GCGCCUGCCGcuguUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 75852 | 0.66 | 0.84666 |
Target: 5'- -gCGCGG-CGCcGACGGCGGCcccGACg- -3' miRNA: 3'- aaGCGUCaGCGcCUGCCGCUG---UUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 127689 | 0.66 | 0.84666 |
Target: 5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3' miRNA: 3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 17958 | 0.66 | 0.84666 |
Target: 5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3' miRNA: 3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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