miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 12345 0.66 0.854601
Target:  5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3'
miRNA:   3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 53653 0.66 0.854601
Target:  5'- aUCGCAGgcggccuggcCGCGGgucGCGGCcucGACAGCg- -3'
miRNA:   3'- aAGCGUCa---------GCGCC---UGCCG---CUGUUGac -5'
23559 3' -57 NC_005261.1 + 39334 0.66 0.854601
Target:  5'- -gCGCcGcCGCGGccaagcugcgcGCGGCGGCAGCc- -3'
miRNA:   3'- aaGCGuCaGCGCC-----------UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 35514 0.66 0.854601
Target:  5'- -cCGCuGgcaGCGGcauCGGCGGCAACa- -3'
miRNA:   3'- aaGCGuCag-CGCCu--GCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 117020 0.66 0.854601
Target:  5'- -cCGCcGUCGCGGcCGGgGcCAGCg- -3'
miRNA:   3'- aaGCGuCAGCGCCuGCCgCuGUUGac -5'
23559 3' -57 NC_005261.1 + 76315 0.66 0.853816
Target:  5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 52840 0.66 0.84986
Target:  5'- cUCGCGGgCGCcuaccagaagcccgaGGGCGGCGGCGcgaACa- -3'
miRNA:   3'- aAGCGUCaGCG---------------CCUGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 121772 0.66 0.84666
Target:  5'- -gCGCGGUgggguggcCGCGGcCGGCGG--GCUGg -3'
miRNA:   3'- aaGCGUCA--------GCGCCuGCCGCUguUGAC- -5'
23559 3' -57 NC_005261.1 + 122440 0.66 0.84666
Target:  5'- -gCGCuGgccgCGCGGGCGGCGcccgcCAGCg- -3'
miRNA:   3'- aaGCGuCa---GCGCCUGCCGCu----GUUGac -5'
23559 3' -57 NC_005261.1 + 44338 0.66 0.84666
Target:  5'- -cCGCAGUCGC---UGGCGACcgcgcuGCUGa -3'
miRNA:   3'- aaGCGUCAGCGccuGCCGCUGu-----UGAC- -5'
23559 3' -57 NC_005261.1 + 93418 0.66 0.84666
Target:  5'- -cUGCGGcUGCGGcuGCGGCuGCGGCUGc -3'
miRNA:   3'- aaGCGUCaGCGCC--UGCCGcUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 90544 0.66 0.84666
Target:  5'- -aCGCGGcgcCGCGGGCGGCcgu-GCUGc -3'
miRNA:   3'- aaGCGUCa--GCGCCUGCCGcuguUGAC- -5'
23559 3' -57 NC_005261.1 + 108109 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 75852 0.66 0.84666
Target:  5'- -gCGCGG-CGCcGACGGCGGCcccGACg- -3'
miRNA:   3'- aaGCGUCaGCGcCUGCCGCUG---UUGac -5'
23559 3' -57 NC_005261.1 + 5817 0.66 0.84666
Target:  5'- --aGCAGgggugCGCGGGCcaggcgucGGCGGCGGCc- -3'
miRNA:   3'- aagCGUCa----GCGCCUG--------CCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 35979 0.66 0.84666
Target:  5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3'
miRNA:   3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5'
23559 3' -57 NC_005261.1 + 127689 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 122342 0.66 0.84666
Target:  5'- cUCGCAGagcUCGCcuGGCGGCcGCGGCUc -3'
miRNA:   3'- aAGCGUC---AGCGc-CUGCCGcUGUUGAc -5'
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 17958 0.66 0.84666
Target:  5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3'
miRNA:   3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.