miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 138196 0.67 0.475757
Target:  5'- gCGCGGGCgGGCGgGgGGCagggcggacgGCGGCUc -3'
miRNA:   3'- gGCGUCCGgUCGCgCaCCG----------CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 138132 0.75 0.170769
Target:  5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3'
miRNA:   3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 138119 0.72 0.274415
Target:  5'- -gGCGGcGCCGGCGCGggcGGCGgGGCc- -3'
miRNA:   3'- ggCGUC-CGGUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 138019 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 137912 0.68 0.414278
Target:  5'- cUCGCGGGCCc-CGCGagcgGGCcCGGCUGc -3'
miRNA:   3'- -GGCGUCCGGucGCGCa---CCGcGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 137836 0.67 0.475757
Target:  5'- -gGCAgGGCUGGCGgaGuUGGCGgGGCUGg -3'
miRNA:   3'- ggCGU-CCGGUCGCg-C-ACCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 137070 0.69 0.365645
Target:  5'- gCGCGGGCCGgcGCGCGUGGaaguGCUc -3'
miRNA:   3'- gGCGUCCGGU--CGCGCACCgcguCGAc -5'
23561 3' -62.9 NC_005261.1 + 137055 0.68 0.46669
Target:  5'- aCCGUcGGCaGGCGCGgaGGCGCgGGCa- -3'
miRNA:   3'- -GGCGuCCGgUCGCGCa-CCGCG-UCGac -5'
23561 3' -62.9 NC_005261.1 + 136897 0.71 0.314079
Target:  5'- gUGCAGGCgCGGCGCGgcGGCGUcccggAGCg- -3'
miRNA:   3'- gGCGUCCG-GUCGCGCa-CCGCG-----UCGac -5'
23561 3' -62.9 NC_005261.1 + 136863 0.67 0.475757
Target:  5'- gCgGCAGGgCAGgaugGCGUaGGCGCGGCc- -3'
miRNA:   3'- -GgCGUCCgGUCg---CGCA-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 136837 0.69 0.373472
Target:  5'- gCCGC-GGCCgcGGCGCccGGCGUGGcCUGg -3'
miRNA:   3'- -GGCGuCCGG--UCGCGcaCCGCGUC-GAC- -5'
23561 3' -62.9 NC_005261.1 + 136797 0.69 0.405899
Target:  5'- gUGCAGGCCAGUgGCG-GGCucGUAGCc- -3'
miRNA:   3'- gGCGUCCGGUCG-CGCaCCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 136750 0.72 0.250267
Target:  5'- gCGguGGCCuucuGCGCGgccGCGCuGCUGg -3'
miRNA:   3'- gGCguCCGGu---CGCGCac-CGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 136678 0.7 0.335482
Target:  5'- gCCGCugcGGCCGGUguaccuggccuGCGggcGGCGCGcGCUGg -3'
miRNA:   3'- -GGCGu--CCGGUCG-----------CGCa--CCGCGU-CGAC- -5'
23561 3' -62.9 NC_005261.1 + 136574 0.68 0.436552
Target:  5'- gCGCGGGUgGGCGgGcgcagagacgcccGGCGCAGCg- -3'
miRNA:   3'- gGCGUCCGgUCGCgCa------------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 136429 0.67 0.484912
Target:  5'- gUCGCAGGCCcccuCGCG-GGCGUcGCa- -3'
miRNA:   3'- -GGCGUCCGGuc--GCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 136330 0.7 0.321097
Target:  5'- gCGCuGGCCugagcGGCGCGcgcUGGCGCGcgccguGCUGg -3'
miRNA:   3'- gGCGuCCGG-----UCGCGC---ACCGCGU------CGAC- -5'
23561 3' -62.9 NC_005261.1 + 136241 0.66 0.531854
Target:  5'- cCCGCGaacuGGCC-GCGCGaUGGCcCGGCc- -3'
miRNA:   3'- -GGCGU----CCGGuCGCGC-ACCGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 136189 0.69 0.405899
Target:  5'- cCUGC-GGCUGGcCGCGgcgcGGCGgCGGCUGa -3'
miRNA:   3'- -GGCGuCCGGUC-GCGCa---CCGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 135905 0.71 0.287173
Target:  5'- cCCG-AGGaCguGCGCGUGGUGguGCUc -3'
miRNA:   3'- -GGCgUCC-GguCGCGCACCGCguCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.