miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 49738 0.75 0.158637
Target:  5'- gCGCGGGUCgAGCGCGgcgcgcuccGGCGCGGCa- -3'
miRNA:   3'- gGCGUCCGG-UCGCGCa--------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 106261 0.78 0.106219
Target:  5'- gCGCGGGCCcaGGCGCGUGGCcaccguGUAGCg- -3'
miRNA:   3'- gGCGUCCGG--UCGCGCACCG------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 35385 0.77 0.117555
Target:  5'- gCUGCuGGcCCAGCaCGUGGCGCGGCg- -3'
miRNA:   3'- -GGCGuCC-GGUCGcGCACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 20557 0.77 0.12056
Target:  5'- gCCGCGGGCCcggccgGGCGCGgcggGGCGCuuAGCg- -3'
miRNA:   3'- -GGCGUCCGG------UCGCGCa---CCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 133714 0.76 0.143673
Target:  5'- gCCGCGGcGCCcGCGCGgGGCGCGaCUGg -3'
miRNA:   3'- -GGCGUC-CGGuCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 35733 0.76 0.147288
Target:  5'- gCGCaAGGCCcaGGCGC-UGGCGCGGCg- -3'
miRNA:   3'- gGCG-UCCGG--UCGCGcACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 78843 0.76 0.147288
Target:  5'- gCC-CGGGCuCGGCGcCGUGGCGCGggcGCUGg -3'
miRNA:   3'- -GGcGUCCG-GUCGC-GCACCGCGU---CGAC- -5'
23561 3' -62.9 NC_005261.1 + 20181 0.75 0.150986
Target:  5'- gCCGCGGccGCCAGCGCG-GGCGUcGCg- -3'
miRNA:   3'- -GGCGUC--CGGUCGCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 54890 0.75 0.150986
Target:  5'- uCUGCGGGCCAcgguggcggcggGCgGCGUGGCGCcgcccgAGCUGc -3'
miRNA:   3'- -GGCGUCCGGU------------CG-CGCACCGCG------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 101362 0.78 0.106219
Target:  5'- gCGCGGGCCAGCGUGcggggcgGGCGgAGCg- -3'
miRNA:   3'- gGCGUCCGGUCGCGCa------CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 38112 0.78 0.10355
Target:  5'- gCUGC-GGCCGGUGCG-GGCGCcGCUGg -3'
miRNA:   3'- -GGCGuCCGGUCGCGCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 30715 0.78 0.10355
Target:  5'- aCGCGcugcccuucGGCgCGGCcuGCGUGGCGCAGCUGc -3'
miRNA:   3'- gGCGU---------CCG-GUCG--CGCACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 31097 0.86 0.025032
Target:  5'- gCCGCGGccgugggcgccgucGCCGGCGCgGUGGCGCGGCUGg -3'
miRNA:   3'- -GGCGUC--------------CGGUCGCG-CACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 7446 0.84 0.036566
Target:  5'- uCCGCGgugcGGCCAGCGCGgGGCGcCAGCUGc -3'
miRNA:   3'- -GGCGU----CCGGUCGCGCaCCGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 106425 0.82 0.057164
Target:  5'- gCCGCucAGGCCAGCGCGcGGCGCA-CUGc -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 36501 0.8 0.072252
Target:  5'- -aGCgAGGCCcugaucgcgGGCGCGcUGGCGCAGCUGg -3'
miRNA:   3'- ggCG-UCCGG---------UCGCGC-ACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 101464 0.79 0.080127
Target:  5'- aCGCacGGGCCGGCGUGcaggGGCGCcAGCUGg -3'
miRNA:   3'- gGCG--UCCGGUCGCGCa---CCGCG-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 108345 0.79 0.088818
Target:  5'- gCCGCGGGCCcgGGCGC-UGGCGgCAGCg- -3'
miRNA:   3'- -GGCGUCCGG--UCGCGcACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 65192 0.78 0.100944
Target:  5'- gCGCGGGg-GGCGCGUGGCGCgacGGCUGg -3'
miRNA:   3'- gGCGUCCggUCGCGCACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 29825 0.78 0.10355
Target:  5'- aCGCAGGC--GCG-GUGGCGCGGCUGc -3'
miRNA:   3'- gGCGUCCGguCGCgCACCGCGUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.