miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 84243 0.65 0.587209
Target:  5'- cUCGUccAGGUCGGgGCGcuuggcccccggcaUGGCGCAGgUGc -3'
miRNA:   3'- -GGCG--UCCGGUCgCGC--------------ACCGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 124079 0.66 0.570547
Target:  5'- aCUGCAGcCCGGCGCcc-GCGUAGCg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 63776 0.66 0.570547
Target:  5'- aCGCcgAGGuCCAcGUGCGc-GCGCGGCUGc -3'
miRNA:   3'- gGCG--UCC-GGU-CGCGCacCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 129188 1.08 0.000657
Target:  5'- gCCGCAGGCCAGCGCGUGGCGCAGCUGc -3'
miRNA:   3'- -GGCGUCCGGUCGCGCACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 18438 0.66 0.580335
Target:  5'- cUCGCcGGgCAGCGCGUuccccGUGCAGUUa -3'
miRNA:   3'- -GGCGuCCgGUCGCGCAc----CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 15156 0.66 0.580335
Target:  5'- uCCGC-GGUgGGgGUG-GGCGUAGCg- -3'
miRNA:   3'- -GGCGuCCGgUCgCGCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 2082 0.66 0.580335
Target:  5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3'
miRNA:   3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 83707 0.66 0.580335
Target:  5'- gCCGCAG-CCAGCGCaccaUGaGCGCguuuAGCUu -3'
miRNA:   3'- -GGCGUCcGGUCGCGc---AC-CGCG----UCGAc -5'
23561 3' -62.9 NC_005261.1 + 59722 0.66 0.570547
Target:  5'- cCCGCcGGgCGGCaGCGgcgGcGCGCGGCc- -3'
miRNA:   3'- -GGCGuCCgGUCG-CGCa--C-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 131194 0.66 0.570547
Target:  5'- cCCGCGGcgcggucgccGCCGGCGCGcccgcguacgUGGcCGCgcgcaucgaGGCUGa -3'
miRNA:   3'- -GGCGUC----------CGGUCGCGC----------ACC-GCG---------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 107255 0.66 0.570547
Target:  5'- cCCGCGGGC--GCGCGggcacgggcgGGCGC-GCa- -3'
miRNA:   3'- -GGCGUCCGguCGCGCa---------CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 101855 0.66 0.577395
Target:  5'- cCCGCcGGCCGccugcagcacguccGCGCGcagGGCGCccAGCc- -3'
miRNA:   3'- -GGCGuCCGGU--------------CGCGCa--CCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 115287 0.66 0.580335
Target:  5'- aCGCGGGCagCAGCcgcaacGCGUcGGCGCAcGuCUGc -3'
miRNA:   3'- gGCGUCCG--GUCG------CGCA-CCGCGU-C-GAC- -5'
23561 3' -62.9 NC_005261.1 + 63725 0.66 0.570547
Target:  5'- uCCGUgagcGGCguGCGCaUGGCcGCGGCg- -3'
miRNA:   3'- -GGCGu---CCGguCGCGcACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 72482 0.66 0.580335
Target:  5'- nCGC-GGCCAGCGCcagGaGCGCcGCg- -3'
miRNA:   3'- gGCGuCCGGUCGCGca-C-CGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 36652 0.66 0.579355
Target:  5'- gCGCgggcuugGGGCCAGgGuCGaacgcuggGGCGguGCUGa -3'
miRNA:   3'- gGCG-------UCCGGUCgC-GCa-------CCGCguCGAC- -5'
23561 3' -62.9 NC_005261.1 + 14802 0.66 0.570547
Target:  5'- cCCGCAGGCU-GCGCacgucCGCGGCUu -3'
miRNA:   3'- -GGCGUCCGGuCGCGcacc-GCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 84552 0.66 0.570547
Target:  5'- aCGCGGGcCCAGCGCcUGGaGCAcgGCc- -3'
miRNA:   3'- gGCGUCC-GGUCGCGcACCgCGU--CGac -5'
23561 3' -62.9 NC_005261.1 + 57963 0.66 0.580335
Target:  5'- gCGCAcGCCGGCGaCGcaGGCGCGcGCg- -3'
miRNA:   3'- gGCGUcCGGUCGC-GCa-CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 11220 0.66 0.580335
Target:  5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3'
miRNA:   3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.