Results 21 - 40 of 791 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23561 | 3' | -62.9 | NC_005261.1 | + | 12170 | 0.66 | 0.570547 |
Target: 5'- cCCGCacAGGCCAGCGCcGccGCcaccauGCAGCg- -3' miRNA: 3'- -GGCG--UCCGGUCGCG-CacCG------CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 63776 | 0.66 | 0.570547 |
Target: 5'- aCGCcgAGGuCCAcGUGCGc-GCGCGGCUGc -3' miRNA: 3'- gGCG--UCC-GGU-CGCGCacCGCGUCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 101855 | 0.66 | 0.577395 |
Target: 5'- cCCGCcGGCCGccugcagcacguccGCGCGcagGGCGCccAGCc- -3' miRNA: 3'- -GGCGuCCGGU--------------CGCGCa--CCGCG--UCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 57963 | 0.66 | 0.580335 |
Target: 5'- gCGCAcGCCGGCGaCGcaGGCGCGcGCg- -3' miRNA: 3'- gGCGUcCGGUCGC-GCa-CCGCGU-CGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 37168 | 0.66 | 0.551097 |
Target: 5'- gCGCGcGCUuGCGCcugGGCGCuGCUGg -3' miRNA: 3'- gGCGUcCGGuCGCGca-CCGCGuCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 104170 | 0.66 | 0.560799 |
Target: 5'- uCCGCGGGCgCcGCGCGcgGGuCGUcgGGCg- -3' miRNA: 3'- -GGCGUCCG-GuCGCGCa-CC-GCG--UCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 124079 | 0.66 | 0.570547 |
Target: 5'- aCUGCAGcCCGGCGCcc-GCGUAGCg- -3' miRNA: 3'- -GGCGUCcGGUCGCGcacCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 72482 | 0.66 | 0.580335 |
Target: 5'- nCGC-GGCCAGCGCcagGaGCGCcGCg- -3' miRNA: 3'- gGCGuCCGGUCGCGca-C-CGCGuCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 45615 | 0.66 | 0.560799 |
Target: 5'- aCCgGC-GGCgCGGCGC--GGCGCGGCg- -3' miRNA: 3'- -GG-CGuCCG-GUCGCGcaCCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 115287 | 0.66 | 0.580335 |
Target: 5'- aCGCGGGCagCAGCcgcaacGCGUcGGCGCAcGuCUGc -3' miRNA: 3'- gGCGUCCG--GUCG------CGCA-CCGCGU-C-GAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 84552 | 0.66 | 0.570547 |
Target: 5'- aCGCGGGcCCAGCGCcUGGaGCAcgGCc- -3' miRNA: 3'- gGCGUCC-GGUCGCGcACCgCGU--CGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 19153 | 0.66 | 0.570547 |
Target: 5'- gCGCAcGGCCAGCcgGCGgaucacGCgaaGCAGCUGc -3' miRNA: 3'- gGCGU-CCGGUCG--CGCac----CG---CGUCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 63725 | 0.66 | 0.570547 |
Target: 5'- uCCGUgagcGGCguGCGCaUGGCcGCGGCg- -3' miRNA: 3'- -GGCGu---CCGguCGCGcACCG-CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 59722 | 0.66 | 0.570547 |
Target: 5'- cCCGCcGGgCGGCaGCGgcgGcGCGCGGCc- -3' miRNA: 3'- -GGCGuCCgGUCG-CGCa--C-CGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 2082 | 0.66 | 0.580335 |
Target: 5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3' miRNA: 3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 18438 | 0.66 | 0.580335 |
Target: 5'- cUCGCcGGgCAGCGCGUuccccGUGCAGUUa -3' miRNA: 3'- -GGCGuCCgGUCGCGCAc----CGCGUCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 10478 | 0.66 | 0.55013 |
Target: 5'- -aGCAGGCCGGCcCGcugcaccggcuuuUGcGCGCGGCc- -3' miRNA: 3'- ggCGUCCGGUCGcGC-------------AC-CGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 122639 | 0.66 | 0.551097 |
Target: 5'- gCGCgAGGcCCGGCGCGcguacgugGGCGCgaagAGCa- -3' miRNA: 3'- gGCG-UCC-GGUCGCGCa-------CCGCG----UCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 46557 | 0.66 | 0.551097 |
Target: 5'- cCCGCAGcGCgAGCGCugcugcGaGCGCGGCc- -3' miRNA: 3'- -GGCGUC-CGgUCGCGca----C-CGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 34200 | 0.66 | 0.560799 |
Target: 5'- gCCGgAGGCagaCGGCGCGUcGGaCGCGGaCg- -3' miRNA: 3'- -GGCgUCCG---GUCGCGCA-CC-GCGUC-Gac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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