Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 13122 | 0.66 | 0.728462 |
Target: 5'- nGGCGGccGCGGGgcGCGugUGG-UCGg -3' miRNA: 3'- gCCGCCa-CGCCCuuCGCcgACCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 85917 | 0.66 | 0.728462 |
Target: 5'- aCGGCGaggaGUGCGacgacgacaauGGuGGCGGCUGGacCGc -3' miRNA: 3'- -GCCGC----CACGC-----------CCuUCGCCGACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 90227 | 0.66 | 0.728462 |
Target: 5'- cCGGCGGgGCGac-GGCGGCUGcgacgccguGUUCGc -3' miRNA: 3'- -GCCGCCaCGCccuUCGCCGAC---------CAAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60857 | 0.66 | 0.728462 |
Target: 5'- aGGgGGUGCGccGGAGacgcGCGGcCUGGUg-- -3' miRNA: 3'- gCCgCCACGC--CCUU----CGCC-GACCAagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 9511 | 0.66 | 0.728462 |
Target: 5'- aCGGCGG-GCGGGcGG-GGCccgGGcgCGc -3' miRNA: 3'- -GCCGCCaCGCCCuUCgCCGa--CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 22341 | 0.66 | 0.728462 |
Target: 5'- aCGGCGGgGa-GGAGGCGGCgagGGa--- -3' miRNA: 3'- -GCCGCCaCgcCCUUCGCCGa--CCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 34649 | 0.66 | 0.728462 |
Target: 5'- aCGGCGGcgagcgacggcGCGGGcGGCGGC-GGcaCGg -3' miRNA: 3'- -GCCGCCa----------CGCCCuUCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 134207 | 0.66 | 0.728462 |
Target: 5'- uCGGCGc-GCGGGucgcGGCGGCcGGcagcgUCGg -3' miRNA: 3'- -GCCGCcaCGCCCu---UCGCCGaCCa----AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 72617 | 0.66 | 0.725591 |
Target: 5'- gGGCGG-GCGGGcgcagGGGCGGCUuuauaguccccuggGGgccgccUCGg -3' miRNA: 3'- gCCGCCaCGCCC-----UUCGCCGA--------------CCa-----AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 71998 | 0.66 | 0.722712 |
Target: 5'- aCGGCGGgcaucaagcagcggcUGCuGGGcGGCGuGCUGGcgCu -3' miRNA: 3'- -GCCGCC---------------ACG-CCCuUCGC-CGACCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 28689 | 0.66 | 0.718865 |
Target: 5'- gCGGCGGUugugGCGaGGggGCccgcGGCgGGcgCGc -3' miRNA: 3'- -GCCGCCA----CGC-CCuuCG----CCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 121896 | 0.66 | 0.718865 |
Target: 5'- cCGGCGG-GCaGGAgaccGGCGGCgagGGg--- -3' miRNA: 3'- -GCCGCCaCGcCCU----UCGCCGa--CCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 65524 | 0.66 | 0.718865 |
Target: 5'- gCGGCGGgcgcgacgcugGCGGaccuGGCGcGCcGGUUCGc -3' miRNA: 3'- -GCCGCCa----------CGCCcu--UCGC-CGaCCAAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 32896 | 0.66 | 0.718865 |
Target: 5'- aCGGCcGUGgCGGuGGGCGGCgccGGggCGg -3' miRNA: 3'- -GCCGcCAC-GCCcUUCGCCGa--CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 39375 | 0.66 | 0.718865 |
Target: 5'- uCGGCGGc-CGGGGagGGCGGCccUGGcggCGa -3' miRNA: 3'- -GCCGCCacGCCCU--UCGCCG--ACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 82854 | 0.66 | 0.718865 |
Target: 5'- gCGGCGGcagcgGCGGcGGGCcaGGCUGGg--- -3' miRNA: 3'- -GCCGCCa----CGCCcUUCG--CCGACCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 3540 | 0.66 | 0.717901 |
Target: 5'- -cGCGGUcgcagucgcagucGuCGGGuccuGGCGGCUGGUgguUCGc -3' miRNA: 3'- gcCGCCA-------------C-GCCCu---UCGCCGACCA---AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 33724 | 0.66 | 0.715005 |
Target: 5'- gGGCGGUGgGGGccugccccucgcGCGGCgccgGGgcCGg -3' miRNA: 3'- gCCGCCACgCCCuu----------CGCCGa---CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 11755 | 0.66 | 0.709197 |
Target: 5'- uGGCGGcGCGGuacuaccgcGAGGCGagcgcGCUGGcgCGg -3' miRNA: 3'- gCCGCCaCGCC---------CUUCGC-----CGACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 51509 | 0.66 | 0.709197 |
Target: 5'- gCGGCGGacgagGCGGcGAAGCuggacgcGCUGGgcgCGu -3' miRNA: 3'- -GCCGCCa----CGCC-CUUCGc------CGACCaa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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