miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 13122 0.66 0.728462
Target:  5'- nGGCGGccGCGGGgcGCGugUGG-UCGg -3'
miRNA:   3'- gCCGCCa-CGCCCuuCGCcgACCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 85917 0.66 0.728462
Target:  5'- aCGGCGaggaGUGCGacgacgacaauGGuGGCGGCUGGacCGc -3'
miRNA:   3'- -GCCGC----CACGC-----------CCuUCGCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 90227 0.66 0.728462
Target:  5'- cCGGCGGgGCGac-GGCGGCUGcgacgccguGUUCGc -3'
miRNA:   3'- -GCCGCCaCGCccuUCGCCGAC---------CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 60857 0.66 0.728462
Target:  5'- aGGgGGUGCGccGGAGacgcGCGGcCUGGUg-- -3'
miRNA:   3'- gCCgCCACGC--CCUU----CGCC-GACCAagc -5'
23563 3' -60.6 NC_005261.1 + 9511 0.66 0.728462
Target:  5'- aCGGCGG-GCGGGcGG-GGCccgGGcgCGc -3'
miRNA:   3'- -GCCGCCaCGCCCuUCgCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 22341 0.66 0.728462
Target:  5'- aCGGCGGgGa-GGAGGCGGCgagGGa--- -3'
miRNA:   3'- -GCCGCCaCgcCCUUCGCCGa--CCaagc -5'
23563 3' -60.6 NC_005261.1 + 34649 0.66 0.728462
Target:  5'- aCGGCGGcgagcgacggcGCGGGcGGCGGC-GGcaCGg -3'
miRNA:   3'- -GCCGCCa----------CGCCCuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 134207 0.66 0.728462
Target:  5'- uCGGCGc-GCGGGucgcGGCGGCcGGcagcgUCGg -3'
miRNA:   3'- -GCCGCcaCGCCCu---UCGCCGaCCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 72617 0.66 0.725591
Target:  5'- gGGCGG-GCGGGcgcagGGGCGGCUuuauaguccccuggGGgccgccUCGg -3'
miRNA:   3'- gCCGCCaCGCCC-----UUCGCCGA--------------CCa-----AGC- -5'
23563 3' -60.6 NC_005261.1 + 71998 0.66 0.722712
Target:  5'- aCGGCGGgcaucaagcagcggcUGCuGGGcGGCGuGCUGGcgCu -3'
miRNA:   3'- -GCCGCC---------------ACG-CCCuUCGC-CGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 28689 0.66 0.718865
Target:  5'- gCGGCGGUugugGCGaGGggGCccgcGGCgGGcgCGc -3'
miRNA:   3'- -GCCGCCA----CGC-CCuuCG----CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 121896 0.66 0.718865
Target:  5'- cCGGCGG-GCaGGAgaccGGCGGCgagGGg--- -3'
miRNA:   3'- -GCCGCCaCGcCCU----UCGCCGa--CCaagc -5'
23563 3' -60.6 NC_005261.1 + 65524 0.66 0.718865
Target:  5'- gCGGCGGgcgcgacgcugGCGGaccuGGCGcGCcGGUUCGc -3'
miRNA:   3'- -GCCGCCa----------CGCCcu--UCGC-CGaCCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 32896 0.66 0.718865
Target:  5'- aCGGCcGUGgCGGuGGGCGGCgccGGggCGg -3'
miRNA:   3'- -GCCGcCAC-GCCcUUCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 39375 0.66 0.718865
Target:  5'- uCGGCGGc-CGGGGagGGCGGCccUGGcggCGa -3'
miRNA:   3'- -GCCGCCacGCCCU--UCGCCG--ACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 82854 0.66 0.718865
Target:  5'- gCGGCGGcagcgGCGGcGGGCcaGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa----CGCCcUUCG--CCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 3540 0.66 0.717901
Target:  5'- -cGCGGUcgcagucgcagucGuCGGGuccuGGCGGCUGGUgguUCGc -3'
miRNA:   3'- gcCGCCA-------------C-GCCCu---UCGCCGACCA---AGC- -5'
23563 3' -60.6 NC_005261.1 + 33724 0.66 0.715005
Target:  5'- gGGCGGUGgGGGccugccccucgcGCGGCgccgGGgcCGg -3'
miRNA:   3'- gCCGCCACgCCCuu----------CGCCGa---CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 11755 0.66 0.709197
Target:  5'- uGGCGGcGCGGuacuaccgcGAGGCGagcgcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCaCGCC---------CUUCGC-----CGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 51509 0.66 0.709197
Target:  5'- gCGGCGGacgagGCGGcGAAGCuggacgcGCUGGgcgCGu -3'
miRNA:   3'- -GCCGCCa----CGCC-CUUCGc------CGACCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.