miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 123615 0.67 0.795152
Target:  5'- -gCAGGUUCAGGCugcccaucagccGCUgCGCGaucagCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCG------------CGAgGCGCa----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 99490 0.67 0.804158
Target:  5'- ---cGG-CC-AGCGCcgCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGuUCGCGa-GGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 102520 0.66 0.830197
Target:  5'- -gCAGGUCCGcgugcagcuuGGcCGC-CUGCGgCCCCa -3'
miRNA:   3'- aaGUUCAGGU----------UC-GCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 107640 0.66 0.853816
Target:  5'- cUCGAGcgCCc-GCGCugcgcgcgcaaacUCCGCGgCCCCg -3'
miRNA:   3'- aAGUUCa-GGuuCGCG-------------AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 79492 0.68 0.745156
Target:  5'- gUUCAGGUCCAcgaaGGUgcuaaucaccuccaGCUCCGCGagcgggaCCCg -3'
miRNA:   3'- -AAGUUCAGGU----UCG--------------CGAGGCGCag-----GGG- -5'
23563 5' -57.1 NC_005261.1 + 48918 0.67 0.785998
Target:  5'- -gCGAGcCCGGGCGCcagcgCCGCuGUCUCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGa----GGCG-CAGGGg -5'
23563 5' -57.1 NC_005261.1 + 32378 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 123287 0.66 0.854601
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
23563 5' -57.1 NC_005261.1 + 116153 0.67 0.785998
Target:  5'- --aGAGgaagCAGcGCGCggucgcggCCGCGUCCCCg -3'
miRNA:   3'- aagUUCag--GUU-CGCGa-------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 37767 0.66 0.854601
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 15364 0.67 0.804158
Target:  5'- ----cGUCCcggcGGCGCUCgGCGcCCUCg -3'
miRNA:   3'- aaguuCAGGu---UCGCGAGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 65842 0.67 0.791508
Target:  5'- -cCGAGUgCCGcgaguAGCGgUCCGCGgcggcuuguacagCCCCa -3'
miRNA:   3'- aaGUUCA-GGU-----UCGCgAGGCGCa------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 98282 0.66 0.821689
Target:  5'- gUUCGAcgCCcGGCGCgUCCGCGgCCUCg -3'
miRNA:   3'- -AAGUUcaGGuUCGCG-AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 53887 0.66 0.830197
Target:  5'- gUCGAGUCgAAGCgggcccGCUUCGCGagcggCgCCCg -3'
miRNA:   3'- aAGUUCAGgUUCG------CGAGGCGCa----G-GGG- -5'
23563 5' -57.1 NC_005261.1 + 42853 0.66 0.838524
Target:  5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3'
miRNA:   3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 102575 0.66 0.85224
Target:  5'- cUCGccGUCCGcgucGGCGgccucgcccgcgccUUCCGCGUCCUCg -3'
miRNA:   3'- aAGUu-CAGGU----UCGC--------------GAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 100054 0.68 0.71852
Target:  5'- cUCGAGcgcgCCGccgccgcccgggGGCGCgCCGCG-CCCCu -3'
miRNA:   3'- aAGUUCa---GGU------------UCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 41403 0.68 0.738313
Target:  5'- gUUAcGUCCGAGCGCgccaCGacgaGUCCCUu -3'
miRNA:   3'- aAGUuCAGGUUCGCGag--GCg---CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 52419 0.67 0.767279
Target:  5'- --aAAGUCCucgaAGGCG-UCCGCGUCCa- -3'
miRNA:   3'- aagUUCAGG----UUCGCgAGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 39592 0.67 0.776704
Target:  5'- -cCAGcgCCGAGCGC-CgCGCGcCCCCg -3'
miRNA:   3'- aaGUUcaGGUUCGCGaG-GCGCaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.