miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 85388 0.66 0.854601
Target:  5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3'
miRNA:   3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5'
23563 5' -57.1 NC_005261.1 + 32378 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 99490 0.67 0.804158
Target:  5'- ---cGG-CC-AGCGCcgCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGuUCGCGa-GGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 126732 0.97 0.011816
Target:  5'- gUUCAAGUCCAAGCG-UCCGCGUCCCCa -3'
miRNA:   3'- -AAGUUCAGGUUCGCgAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 102575 0.66 0.85224
Target:  5'- cUCGccGUCCGcgucGGCGgccucgcccgcgccUUCCGCGUCCUCg -3'
miRNA:   3'- aAGUu-CAGGU----UCGC--------------GAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 108166 0.66 0.84666
Target:  5'- -gCGcGUCCGccagGGCGCgcggCCGCGgCUCCg -3'
miRNA:   3'- aaGUuCAGGU----UCGCGa---GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 42853 0.66 0.838524
Target:  5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3'
miRNA:   3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 103680 0.66 0.837699
Target:  5'- -gCGAGgCCGAGCGC-CCGUuuauagcggccacGUCaCCCa -3'
miRNA:   3'- aaGUUCaGGUUCGCGaGGCG-------------CAG-GGG- -5'
23563 5' -57.1 NC_005261.1 + 53887 0.66 0.830197
Target:  5'- gUCGAGUCgAAGCgggcccGCUUCGCGagcggCgCCCg -3'
miRNA:   3'- aAGUUCAGgUUCG------CGAGGCGCa----G-GGG- -5'
23563 5' -57.1 NC_005261.1 + 72703 0.66 0.821689
Target:  5'- -cCAGGUCCGccAGCGUcgcgcCCGCcG-CCCCg -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa----GGCG-CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 40838 0.66 0.827663
Target:  5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3'
miRNA:   3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 102520 0.66 0.830197
Target:  5'- -gCAGGUCCGcgugcagcuuGGcCGC-CUGCGgCCCCa -3'
miRNA:   3'- aaGUUCAGGU----------UC-GCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 37767 0.66 0.854601
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 98282 0.66 0.821689
Target:  5'- gUUCGAcgCCcGGCGCgUCCGCGgCCUCg -3'
miRNA:   3'- -AAGUUcaGGuUCGCG-AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 123287 0.66 0.854601
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
23563 5' -57.1 NC_005261.1 + 66438 0.66 0.830197
Target:  5'- -cCGAGaCCAgcgcGGCGCgcgCCGCcgGUCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa--GGCG--CAGGGg -5'
23563 5' -57.1 NC_005261.1 + 105292 0.66 0.821689
Target:  5'- -gCGAGcCCGGGCGCgcgagcgCgGgGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGa------GgCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 15364 0.67 0.804158
Target:  5'- ----cGUCCcggcGGCGCUCgGCGcCCUCg -3'
miRNA:   3'- aaguuCAGGu---UCGCGAGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 107640 0.66 0.853816
Target:  5'- cUCGAGcgCCc-GCGCugcgcgcgcaaacUCCGCGgCCCCg -3'
miRNA:   3'- aAGUUCa-GGuuCGCG-------------AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 106735 0.66 0.838524
Target:  5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3'
miRNA:   3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.