miRNA display CGI


Results 21 - 40 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 122197 0.66 0.680845
Target:  5'- -cGCCCuGCGUGuuGCUCUUCCaagaCGa -3'
miRNA:   3'- ucCGGG-CGCAUggCGAGAAGGgc--GCg -5'
23564 3' -61.4 NC_005261.1 + 74112 0.66 0.680845
Target:  5'- cGGCCgCGCGgcaCGUgccgCCCGUGCc -3'
miRNA:   3'- uCCGG-GCGCaugGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 64166 0.66 0.680845
Target:  5'- cGGgCCGCGUcgcgcagcuGCCGCagCccCCCgGCGCg -3'
miRNA:   3'- uCCgGGCGCA---------UGGCGa-GaaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 31298 0.66 0.680845
Target:  5'- gAGGUgCGCGUGUCGCUggCggCCCugcaGCGCg -3'
miRNA:   3'- -UCCGgGCGCAUGGCGA--GaaGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 98250 0.66 0.680845
Target:  5'- cGGCCCG-GUGCgGCgcgucaggCggCgCGCGCg -3'
miRNA:   3'- uCCGGGCgCAUGgCGa-------GaaGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 55555 0.66 0.680845
Target:  5'- uGGcGCCCGaCGaGCgGCUCgaggcgcucaUCCGCGCg -3'
miRNA:   3'- -UC-CGGGC-GCaUGgCGAGaa--------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 93070 0.66 0.679864
Target:  5'- uGGCCaCGCGcGCCuuauauagauccaGCUCgUCCgcauCGCGCg -3'
miRNA:   3'- uCCGG-GCGCaUGG-------------CGAGaAGG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 121036 0.66 0.679864
Target:  5'- uGGGCgcgcugcucgccgCCGCGgcaggGCUGCcCacgCCCGCGCc -3'
miRNA:   3'- -UCCG-------------GGCGCa----UGGCGaGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 102652 0.66 0.678883
Target:  5'- cGGCCCGCagcaccuccuCCGCggcgCCCaGCGCc -3'
miRNA:   3'- uCCGGGCGcau-------GGCGagaaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 97762 0.66 0.678883
Target:  5'- aGGGCCUGagccucgacaagGUcGCCGUgugCUUCgCGCGCg -3'
miRNA:   3'- -UCCGGGCg-----------CA-UGGCGa--GAAGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 38921 0.66 0.676921
Target:  5'- cGGGCCCGCGcgccaagccggcgGCCGggCgggCCgcggCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa------------UGGCgaGaa-GG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 36779 0.66 0.674956
Target:  5'- cGGCCCGUGcguugcgccgagacuUugCGC-CggCCgGCGCu -3'
miRNA:   3'- uCCGGGCGC---------------AugGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 59888 0.66 0.671024
Target:  5'- uGGcGCCCGagGUACCGCguuggCgcgUCgGCGCg -3'
miRNA:   3'- -UC-CGGGCg-CAUGGCGa----Gaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 66239 0.66 0.671024
Target:  5'- aAGGCCagggGCGacgcugcgcaccUGCCGCgcgCUccgcgcCCCGCGCc -3'
miRNA:   3'- -UCCGGg---CGC------------AUGGCGa--GAa-----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 109759 0.66 0.671024
Target:  5'- cAGGUCgaGCGUgGCCgGCUCggCCCGC-Cg -3'
miRNA:   3'- -UCCGGg-CGCA-UGG-CGAGaaGGGCGcG- -5'
23564 3' -61.4 NC_005261.1 + 66333 0.66 0.671024
Target:  5'- uGGCCgGCGg--CGCggagcacuuuuUCgugCCCGCGCg -3'
miRNA:   3'- uCCGGgCGCaugGCG-----------AGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63049 0.66 0.671024
Target:  5'- aAGGUCCGCG-ACaUGCg---CCCGuCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGagaaGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 99687 0.66 0.671024
Target:  5'- uGGCCgCGCGccGgCGCUgUgCCCgGCGCg -3'
miRNA:   3'- uCCGG-GCGCa-UgGCGAgAaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 7763 0.66 0.671024
Target:  5'- gAGGCacgCCGCGaGCCGCUCgggCCaGuCGUa -3'
miRNA:   3'- -UCCG---GGCGCaUGGCGAGaa-GGgC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 6112 0.66 0.671024
Target:  5'- -aGCCgCGCGUcCCGCUCcaCgaGCGCg -3'
miRNA:   3'- ucCGG-GCGCAuGGCGAGaaGggCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.