miRNA display CGI


Results 41 - 60 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 103415 0.66 0.661174
Target:  5'- -aGCuCCGCGcggGCCGCgg--CCaCGCGCg -3'
miRNA:   3'- ucCG-GGCGCa--UGGCGagaaGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 36779 0.66 0.674956
Target:  5'- cGGCCCGUGcguugcgccgagacuUugCGC-CggCCgGCGCu -3'
miRNA:   3'- uCCGGGCGC---------------AugGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 75619 0.66 0.684763
Target:  5'- cGGCgUCGCGUacguggacgacguccACCGCgCggCCgGCGCg -3'
miRNA:   3'- uCCG-GGCGCA---------------UGGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 104787 0.66 0.661174
Target:  5'- cAGGCCgcgauCGCGUGCUccaGCgggUCCCGCuccGCa -3'
miRNA:   3'- -UCCGG-----GCGCAUGG---CGagaAGGGCG---CG- -5'
23564 3' -61.4 NC_005261.1 + 99582 0.66 0.684763
Target:  5'- uGGGCCUGCGcgcccagcgaguccACCGCgagCgucgUCCacaGCGCc -3'
miRNA:   3'- -UCCGGGCGCa-------------UGGCGa--Ga---AGGg--CGCG- -5'
23564 3' -61.4 NC_005261.1 + 98756 0.66 0.63548
Target:  5'- uGGCCgCGCGguUGCCGCUgccgccgccggccgcCgg-CCGCGCg -3'
miRNA:   3'- uCCGG-GCGC--AUGGCGA---------------GaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 107818 0.66 0.680845
Target:  5'- cGGCCCuaGCGgccgccGCCGcCUCUgCCCGguCGCc -3'
miRNA:   3'- uCCGGG--CGCa-----UGGC-GAGAaGGGC--GCG- -5'
23564 3' -61.4 NC_005261.1 + 10176 0.66 0.641415
Target:  5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3'
miRNA:   3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 84316 0.66 0.641415
Target:  5'- aAGGCguaggUCGCGUccgggGCCGCg---CUCGCGCa -3'
miRNA:   3'- -UCCG-----GGCGCA-----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 56400 0.66 0.651302
Target:  5'- gGGGCCCuggGCGccCUGCgCUUCgCgGCGCa -3'
miRNA:   3'- -UCCGGG---CGCauGGCGaGAAG-GgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 46250 0.66 0.651302
Target:  5'- cAGGCCgCgGCGgcgGCCGCgacCgugUCCCcgggGCGCu -3'
miRNA:   3'- -UCCGG-G-CGCa--UGGCGa--Ga--AGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 63654 0.66 0.65229
Target:  5'- -cGUCCGCGUccCCGUUCaccaugggcgggucCCCGCGCg -3'
miRNA:   3'- ucCGGGCGCAu-GGCGAGaa------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 90097 0.66 0.661174
Target:  5'- gGGGCCCGUucGCCgGCUgggccgacgCggCCCGCGg -3'
miRNA:   3'- -UCCGGGCGcaUGG-CGA---------GaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 15184 0.66 0.661174
Target:  5'- cGGcGCCCGCGggaaacGCCGC-Ca--UCGCGCg -3'
miRNA:   3'- -UC-CGGGCGCa-----UGGCGaGaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 69629 0.66 0.661174
Target:  5'- cGGCaCgGCGUG-CGCUa--CCUGCGCg -3'
miRNA:   3'- uCCG-GgCGCAUgGCGAgaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 77268 0.66 0.669056
Target:  5'- -cGCUCGCGgGCgGCgucugcauugcgCUUCCCGuCGCg -3'
miRNA:   3'- ucCGGGCGCaUGgCGa-----------GAAGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 126080 0.66 0.671024
Target:  5'- cGGCCUcgGCGgGCgCGCccaUCUUCgCGCGUa -3'
miRNA:   3'- uCCGGG--CGCaUG-GCG---AGAAGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 93070 0.66 0.679864
Target:  5'- uGGCCaCGCGcGCCuuauauagauccaGCUCgUCCgcauCGCGCg -3'
miRNA:   3'- uCCGG-GCGCaUGG-------------CGAGaAGG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 118630 0.66 0.680845
Target:  5'- uGGCcgCCGCGgcggCGCUCUgggcCCCGgGCc -3'
miRNA:   3'- uCCG--GGCGCaug-GCGAGAa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 62308 0.66 0.680845
Target:  5'- cGGGCgCGCGgcggccCCGCgg-UCCCccaGCGCc -3'
miRNA:   3'- -UCCGgGCGCau----GGCGagaAGGG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.