miRNA display CGI


Results 21 - 40 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 77268 0.66 0.669056
Target:  5'- -cGCUCGCGgGCgGCgucugcauugcgCUUCCCGuCGCg -3'
miRNA:   3'- ucCGGGCGCaUGgCGa-----------GAAGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 126080 0.66 0.671024
Target:  5'- cGGCCUcgGCGgGCgCGCccaUCUUCgCGCGUa -3'
miRNA:   3'- uCCGGG--CGCaUG-GCG---AGAAGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135017 0.66 0.680845
Target:  5'- cGGGCCCGCacgcgGCCGCggcggCgaggccgacgCCUGCGg -3'
miRNA:   3'- -UCCGGGCGca---UGGCGa----Gaa--------GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 122197 0.66 0.680845
Target:  5'- -cGCCCuGCGUGuuGCUCUUCCaagaCGa -3'
miRNA:   3'- ucCGGG-CGCAUggCGAGAAGGgc--GCg -5'
23564 3' -61.4 NC_005261.1 + 93650 0.66 0.661174
Target:  5'- gAGGUCCGCGUA-CGCccacCggUCCGCGg -3'
miRNA:   3'- -UCCGGGCGCAUgGCGa---GaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 34425 0.66 0.661174
Target:  5'- cGGCCCGCGccUGCCcCUgCUgCCgaaCGCGCc -3'
miRNA:   3'- uCCGGGCGC--AUGGcGA-GAaGG---GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 36779 0.66 0.674956
Target:  5'- cGGCCCGUGcguugcgccgagacuUugCGC-CggCCgGCGCu -3'
miRNA:   3'- uCCGGGCGC---------------AugGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 75619 0.66 0.684763
Target:  5'- cGGCgUCGCGUacguggacgacguccACCGCgCggCCgGCGCg -3'
miRNA:   3'- uCCG-GGCGCA---------------UGGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 69629 0.66 0.661174
Target:  5'- cGGCaCgGCGUG-CGCUa--CCUGCGCg -3'
miRNA:   3'- uCCG-GgCGCAUgGCGAgaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 99582 0.66 0.684763
Target:  5'- uGGGCCUGCGcgcccagcgaguccACCGCgagCgucgUCCacaGCGCc -3'
miRNA:   3'- -UCCGGGCGCa-------------UGGCGa--Ga---AGGg--CGCG- -5'
23564 3' -61.4 NC_005261.1 + 103447 0.66 0.671024
Target:  5'- -cGCCuCGCGgucgGCCGC-CgcgCCCGuCGCc -3'
miRNA:   3'- ucCGG-GCGCa---UGGCGaGaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 56074 0.66 0.66216
Target:  5'- uGGGCgaGCaGU-CCGCUCgcuacuuccagcggcUCCUGCGCg -3'
miRNA:   3'- -UCCGggCG-CAuGGCGAGa--------------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 93070 0.66 0.679864
Target:  5'- uGGCCaCGCGcGCCuuauauagauccaGCUCgUCCgcauCGCGCg -3'
miRNA:   3'- uCCGG-GCGCaUGG-------------CGAGaAGG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 118630 0.66 0.680845
Target:  5'- uGGCcgCCGCGgcggCGCUCUgggcCCCGgGCc -3'
miRNA:   3'- uCCG--GGCGCaug-GCGAGAa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 62308 0.66 0.680845
Target:  5'- cGGGCgCGCGgcggccCCGCgg-UCCCccaGCGCc -3'
miRNA:   3'- -UCCGgGCGCau----GGCGagaAGGG---CGCG- -5'
23564 3' -61.4 NC_005261.1 + 107818 0.66 0.680845
Target:  5'- cGGCCCuaGCGgccgccGCCGcCUCUgCCCGguCGCc -3'
miRNA:   3'- uCCGGG--CGCa-----UGGC-GAGAaGGGC--GCG- -5'
23564 3' -61.4 NC_005261.1 + 63654 0.66 0.65229
Target:  5'- -cGUCCGCGUccCCGUUCaccaugggcgggucCCCGCGCg -3'
miRNA:   3'- ucCGGGCGCAu-GGCGAGaa------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 90097 0.66 0.661174
Target:  5'- gGGGCCCGUucGCCgGCUgggccgacgCggCCCGCGg -3'
miRNA:   3'- -UCCGGGCGcaUGG-CGA---------GaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 118827 0.66 0.661174
Target:  5'- uGGGCgCgGCacUGCCGCUCUg-CgGCGCg -3'
miRNA:   3'- -UCCG-GgCGc-AUGGCGAGAagGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 31760 0.66 0.661174
Target:  5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3'
miRNA:   3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.