Results 1 - 20 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 104007 | 0.65 | 0.965821 |
Target: 5'- -gGCCAGuauggcgcGCGCgCUGUacugcGCGCCGc -3' miRNA: 3'- gaCGGUCuuuua---CGCG-GACA-----UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 87428 | 0.66 | 0.963098 |
Target: 5'- -cGCCGGcGAagGCGCCgaagccgaaGCGCCGc -3' miRNA: 3'- gaCGGUCuUUuaCGCGGaca------UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 136306 | 0.66 | 0.963098 |
Target: 5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3' miRNA: 3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 31789 | 0.66 | 0.963098 |
Target: 5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3' miRNA: 3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 23907 | 0.66 | 0.963098 |
Target: 5'- -aGCCAGuccaccuUGCGCCgg-ACuGCCGg -3' miRNA: 3'- gaCGGUCuuuu---ACGCGGacaUG-CGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 87149 | 0.66 | 0.959485 |
Target: 5'- -gGCgagCAGGAAcaGgGCCgUGUACGCCGa -3' miRNA: 3'- gaCG---GUCUUUuaCgCGG-ACAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 64041 | 0.66 | 0.959485 |
Target: 5'- -gGCgCGGcuc-UGCGCCgcgugGUGCGCCa -3' miRNA: 3'- gaCG-GUCuuuuACGCGGa----CAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 115154 | 0.66 | 0.959485 |
Target: 5'- -aGCCGGggGucggGCGCCUccUGCGCg- -3' miRNA: 3'- gaCGGUCuuUua--CGCGGAc-AUGCGgc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 61105 | 0.66 | 0.959485 |
Target: 5'- -cGCCgAGAucgcgcgcUGCGCC-GUGCGCUGc -3' miRNA: 3'- gaCGG-UCUuuu-----ACGCGGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 66722 | 0.66 | 0.959485 |
Target: 5'- -cGCCGGuuGAUGCGCUucaccauguaguUGUGCacggGCUGg -3' miRNA: 3'- gaCGGUCuuUUACGCGG------------ACAUG----CGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 31294 | 0.66 | 0.959485 |
Target: 5'- -gGCCG--AGGUGCGCgUGU-CGCUGg -3' miRNA: 3'- gaCGGUcuUUUACGCGgACAuGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 65288 | 0.66 | 0.959485 |
Target: 5'- -aGCCGGugccgGCGCCg--GCGCUGc -3' miRNA: 3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 14132 | 0.66 | 0.959485 |
Target: 5'- gUGCCGGcccuGUGCGCgCgcuacgcggGCGCCGg -3' miRNA: 3'- gACGGUCuuu-UACGCG-Gaca------UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 68119 | 0.66 | 0.959485 |
Target: 5'- uUGCCGGGcacgagGCGCCgagcuucuCGCCGg -3' miRNA: 3'- gACGGUCUuuua--CGCGGacau----GCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 51976 | 0.66 | 0.955637 |
Target: 5'- gCUGCUGGAccgcgGCGCCgc--CGCCGa -3' miRNA: 3'- -GACGGUCUuuua-CGCGGacauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 126503 | 0.66 | 0.955637 |
Target: 5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3' miRNA: 3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 44862 | 0.66 | 0.955637 |
Target: 5'- -cGCgAGGAAGaGCGCCgccgcGaGCGCCGc -3' miRNA: 3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 78244 | 0.66 | 0.955637 |
Target: 5'- gCUGCCcGAGGGUGCGgaCg--GCGCCu -3' miRNA: 3'- -GACGGuCUUUUACGCg-GacaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 15191 | 0.66 | 0.955637 |
Target: 5'- -gGgCAGAGAAgggGUGCCUGc-UGCCGa -3' miRNA: 3'- gaCgGUCUUUUa--CGCGGACauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 19299 | 0.66 | 0.955637 |
Target: 5'- -gGCCAGccgcGcgGCGCCgcgcccgcgGCGCCGg -3' miRNA: 3'- gaCGGUCuu--UuaCGCGGaca------UGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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