miRNA display CGI


Results 41 - 60 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 129807 0.75 0.40937
Target:  5'- cGCGcucGCGccCGCGCCCUGCGCCc- -3'
miRNA:   3'- uCGCuu-UGCuuGUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 127938 0.71 0.592662
Target:  5'- cGGCGAGGCGcuGCGCGUCgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCu-UGUGCGGga-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 127765 0.67 0.811104
Target:  5'- cGGCGGGcGCGAAgACGCCCgGCuGCUc- -3'
miRNA:   3'- -UCGCUU-UGCUUgUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 127703 0.73 0.502131
Target:  5'- gGGCGAcAGCGAGCGCGCCgCgGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGG-GaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 127673 0.68 0.774487
Target:  5'- gGGCGGGACGGcgGCGgccgcUGCCCcggcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCU--UGU-----GCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 127309 0.67 0.853095
Target:  5'- cGGCu-GGCGGugGgGCCCUGcCGCCc- -3'
miRNA:   3'- -UCGcuUUGCUugUgCGGGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 127265 0.7 0.685433
Target:  5'- cGCGggGCGGcgGCG-GCCCacGCGUCUGg -3'
miRNA:   3'- uCGCuuUGCU--UGUgCGGGa-CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 126511 0.7 0.695632
Target:  5'- aGGCGGucugccugGGCGccCGCGCCCgccGCGCCUc -3'
miRNA:   3'- -UCGCU--------UUGCuuGUGCGGGa--CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 126386 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 126363 1.09 0.002386
Target:  5'- cAGCGAAACGAACACGCCCUGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGUGCGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 126248 0.67 0.845076
Target:  5'- -uCGAGcCGAucgACACGCggcugCUGCGCCUGg -3'
miRNA:   3'- ucGCUUuGCU---UGUGCGg----GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 125873 0.69 0.705778
Target:  5'- cGGcCGggGCG---GCGCCCUuggcugaagGCGCCUGa -3'
miRNA:   3'- -UC-GCuuUGCuugUGCGGGA---------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 125181 0.71 0.602956
Target:  5'- cGGCaGggGCGcGCGCgGCCCcGCGcCCUGg -3'
miRNA:   3'- -UCG-CuuUGCuUGUG-CGGGaCGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 125097 0.68 0.764985
Target:  5'- uGCGggGCGcccccuuccggGGCGCGCUCggguggUGCGUCUGu -3'
miRNA:   3'- uCGCuuUGC-----------UUGUGCGGG------ACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 124917 0.66 0.890003
Target:  5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3'
miRNA:   3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 123368 0.69 0.71586
Target:  5'- cGCGAuGGCGAACuGCGCgaUGCGCCg- -3'
miRNA:   3'- uCGCU-UUGCUUG-UGCGggACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 123198 0.68 0.755363
Target:  5'- gGGCGGAcccagccgccGCGuaAGCGCGgCCUGCcGCCUa -3'
miRNA:   3'- -UCGCUU----------UGC--UUGUGCgGGACG-CGGAc -5'
23565 3' -56.1 NC_005261.1 + 123163 0.7 0.695632
Target:  5'- gGGCGggGCGGGCGCGCgg-GCGUgguggCUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGggaCGCG-----GAC- -5'
23565 3' -56.1 NC_005261.1 + 122947 0.68 0.783859
Target:  5'- aGGCc--GCGAccGCGCGCCCcggcgGCGCCg- -3'
miRNA:   3'- -UCGcuuUGCU--UGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 122855 0.72 0.582398
Target:  5'- cGGCGGcgcCGAGgGCGCCgaGCGCCg- -3'
miRNA:   3'- -UCGCUuu-GCUUgUGCGGgaCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.