miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 124917 0.66 0.890003
Target:  5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3'
miRNA:   3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29298 0.66 0.883065
Target:  5'- cGGCGAGGC---CugGCCCggcagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuuGugCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130219 0.66 0.8759
Target:  5'- aGGCGGAA-GAGCGuCgGCCCgcucagGCGCCg- -3'
miRNA:   3'- -UCGCUUUgCUUGU-G-CGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 126363 1.09 0.002386
Target:  5'- cAGCGAAACGAACACGCCCUGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGUGCGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 133658 0.66 0.890003
Target:  5'- gAGCGcuGCGuGCuCGCCUccgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100809 0.66 0.890003
Target:  5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3'
miRNA:   3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 51371 0.66 0.890003
Target:  5'- cGCGGAguACGcGCAgGCCgUGCGCg-- -3'
miRNA:   3'- uCGCUU--UGCuUGUgCGGgACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 13048 0.66 0.890003
Target:  5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3'
miRNA:   3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 79032 0.66 0.883065
Target:  5'- -cCGggGCGccCGCGCCCUugGCGUCg- -3'
miRNA:   3'- ucGCuuUGCuuGUGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 34935 0.66 0.883065
Target:  5'- cGgGggGCGGccgGCGCGaCCCgggcccgGCGgCCUGg -3'
miRNA:   3'- uCgCuuUGCU---UGUGC-GGGa------CGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 59071 0.66 0.883065
Target:  5'- cGCGGA--GAGCGCGCgCgggUGCGCCg- -3'
miRNA:   3'- uCGCUUugCUUGUGCGgG---ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 120654 0.66 0.888634
Target:  5'- cGGCGcAAggcGCGGGCGCGCCUgugaucucgcgcGCGCCc- -3'
miRNA:   3'- -UCGC-UU---UGCUUGUGCGGGa-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 65825 0.66 0.890003
Target:  5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36593 0.66 0.883065
Target:  5'- cGGCcaccgGggGgGGGCAgCGCuCCUGCGCCc- -3'
miRNA:   3'- -UCG-----CuuUgCUUGU-GCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 60347 0.66 0.890003
Target:  5'- cGGCGccGCGGccGCGCGCCaggcaGUGCUUGg -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCGGga---CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 69340 0.66 0.88932
Target:  5'- cAGCGAcggagacGGCGAcgACGCGgCCgcgcGCGCgCUGg -3'
miRNA:   3'- -UCGCU-------UUGCU--UGUGCgGGa---CGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 4491 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 14956 0.66 0.880939
Target:  5'- aAGCGAGcgggcgugccugggGCGAcuGCGCGgCC-GCGCCg- -3'
miRNA:   3'- -UCGCUU--------------UGCU--UGUGCgGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133734 0.66 0.890003
Target:  5'- gGGCGgcGCGGACaACGCCacgcGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCUUG-UGCGGga--CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 64026 0.66 0.890003
Target:  5'- gAGCGuguucuCGucgGCGCgGCUCUGCGCCg- -3'
miRNA:   3'- -UCGCuuu---GCu--UGUG-CGGGACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.