miRNA display CGI


Results 41 - 60 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 132079 0.68 0.441793
Target:  5'- gGCCgCCGU-CGCCGCUGcCGCggagGGCg- -3'
miRNA:   3'- -CGGgGGCAuGUGGCGAC-GCGg---CCGau -5'
23566 3' -63 NC_005261.1 + 131788 0.67 0.514699
Target:  5'- gGgCCCCG-ACGCCGCgcccgccGCGCCugacGGCg- -3'
miRNA:   3'- -CgGGGGCaUGUGGCGa------CGCGG----CCGau -5'
23566 3' -63 NC_005261.1 + 131655 0.69 0.407592
Target:  5'- cCCCCCGggcGCACCGuCUGCGagGGUg- -3'
miRNA:   3'- cGGGGGCa--UGUGGC-GACGCggCCGau -5'
23566 3' -63 NC_005261.1 + 131441 0.71 0.275767
Target:  5'- cGCCCCCcuUGCGCCGCgccuCGCgGGCg- -3'
miRNA:   3'- -CGGGGGc-AUGUGGCGac--GCGgCCGau -5'
23566 3' -63 NC_005261.1 + 131410 0.75 0.171728
Target:  5'- aGCCCCC---CGCCGCUgccggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGA----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 131218 0.72 0.257425
Target:  5'- cGCCCgCGUACgugGCCGC-GCGCaucgaGGCUGa -3'
miRNA:   3'- -CGGGgGCAUG---UGGCGaCGCGg----CCGAU- -5'
23566 3' -63 NC_005261.1 + 130858 0.66 0.533707
Target:  5'- cGCgCCCGgccggGCGCCGCgGC-CUGGCc- -3'
miRNA:   3'- -CGgGGGCa----UGUGGCGaCGcGGCCGau -5'
23566 3' -63 NC_005261.1 + 130567 0.66 0.52417
Target:  5'- gGCCCgCCGggcggaaGCGCCGCcGCG-CGGCc- -3'
miRNA:   3'- -CGGG-GGCa------UGUGGCGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 129301 0.76 0.127544
Target:  5'- cGCCCCCG-GCGCCccgcgcCUGCGCUGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGGc-----GACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 127694 0.68 0.441793
Target:  5'- uGCCCCgGcgGCGCCggaggaGCUGCGCgUGGCc- -3'
miRNA:   3'- -CGGGGgCa-UGUGG------CGACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 127339 0.67 0.468481
Target:  5'- uGCCgCCGc-CGCCGUUgGCGCCgGGCUc -3'
miRNA:   3'- -CGGgGGCauGUGGCGA-CGCGG-CCGAu -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 126156 0.74 0.193889
Target:  5'- cGCCCCgGcgcggACGCCGCUGCcgcaccGCCGGUa- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGACG------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 126052 0.66 0.543305
Target:  5'- uGCUCCCGcuccgGCGCCaGCcGCccGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa----UGUGG-CGaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 125886 0.67 0.505298
Target:  5'- uGCCgCCGcgGCgGCgGCcGCGCCGGCc- -3'
miRNA:   3'- -CGGgGGCa-UG-UGgCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 125262 0.66 0.543305
Target:  5'- gGCCCUCGcugucugggugUGCGCgCGCcGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGC-----------AUGUG-GCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 125133 0.68 0.44971
Target:  5'- cGCCCCCGaGCcgagcccGCCGCccgccgacGgGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUG-------UGGCGa-------CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 124935 0.67 0.468481
Target:  5'- gGCCCCCGUcGCACaC-CUGCGCCccGCc- -3'
miRNA:   3'- -CGGGGGCA-UGUG-GcGACGCGGc-CGau -5'
23566 3' -63 NC_005261.1 + 124932 0.73 0.223748
Target:  5'- aGgCUCCGccGCGCgCGCUGUGCCGGCg- -3'
miRNA:   3'- -CgGGGGCa-UGUG-GCGACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 124887 0.67 0.505298
Target:  5'- aGCCUCCGccgACCGCUG-GCCGcGCg- -3'
miRNA:   3'- -CGGGGGCaugUGGCGACgCGGC-CGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.