miRNA display CGI


Results 21 - 40 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 29327 0.66 0.572412
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
23566 3' -63 NC_005261.1 + 106971 0.66 0.572412
Target:  5'- cGCCUCgGcgcgcGCGCCGCgcaccGCGUCGGCc- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGa----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 76106 0.66 0.582201
Target:  5'- aGCUggagaaCCGc-CACCGCgccGCGCCGGCg- -3'
miRNA:   3'- -CGGg-----GGCauGUGGCGa--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 67942 0.66 0.582201
Target:  5'- cCCCCCGccgGC-CCGCU-CGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGuGGCGAcGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 102450 0.66 0.552958
Target:  5'- cGCCgCCCGgccuCGgCGCgcagGCGCCGGa-- -3'
miRNA:   3'- -CGG-GGGCau--GUgGCGa---CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 73586 0.66 0.562662
Target:  5'- cCCCCCGcgGCggaggcggcgGCCGCgaGCGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa-UG----------UGGCGa-CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 3827 0.66 0.572412
Target:  5'- uGCCgcgggCCCGgGCGCUgGCggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGG-----GGGCaUGUGG-CGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 84665 0.66 0.582201
Target:  5'- cGCCgCCCGcGC-CCGCgGCcgcgcacacgaaGCCGGCg- -3'
miRNA:   3'- -CGG-GGGCaUGuGGCGaCG------------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 47612 0.66 0.571435
Target:  5'- cGCCCCC-UGCgggggcgGCCGCgGCcGCCGcGCg- -3'
miRNA:   3'- -CGGGGGcAUG-------UGGCGaCG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 104982 0.66 0.582201
Target:  5'- uCCCCCGccccgGCGCC-CaGCGCgGGCg- -3'
miRNA:   3'- cGGGGGCa----UGUGGcGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 117656 0.66 0.572412
Target:  5'- cCCCCCGcuaaGCGCCccGCcGCGCCcGGCc- -3'
miRNA:   3'- cGGGGGCa---UGUGG--CGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 28431 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 32181 0.66 0.582201
Target:  5'- gGCCUgCGggcgGCGCgCGCUGgaGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUG-GCGACg-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 75867 0.66 0.582201
Target:  5'- cGgCCCCGacgGCGCCGUggGCGCgcgcagCGGCg- -3'
miRNA:   3'- -CgGGGGCa--UGUGGCGa-CGCG------GCCGau -5'
23566 3' -63 NC_005261.1 + 2541 0.66 0.582201
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 64816 0.66 0.582201
Target:  5'- cGCgCgCGcGCGCCGC-GCGCCGGg-- -3'
miRNA:   3'- -CGgGgGCaUGUGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 52946 0.66 0.55199
Target:  5'- cGCCagucaaaCUCGgagcaGCGCCGCgccggugcgGCGCCGGCa- -3'
miRNA:   3'- -CGG-------GGGCa----UGUGGCGa--------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 61611 0.66 0.552958
Target:  5'- cGCCCaCCG-ACAgcgccuucgccCCGCUGgccgcccgucCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCaUGU-----------GGCGAC----------GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3717 0.66 0.56169
Target:  5'- aGCUCagacGCGCCGCUgccggacGCGCCGGCg- -3'
miRNA:   3'- -CGGGggcaUGUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 135358 0.66 0.562662
Target:  5'- cGCCCCCGaGgGCCGCcGCGUCacCUGg -3'
miRNA:   3'- -CGGGGGCaUgUGGCGaCGCGGccGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.