miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 95951 0.66 0.582201
Target:  5'- cGCCCgCCGggaucgACcCCaGC-GCGCCGGCc- -3'
miRNA:   3'- -CGGG-GGCa-----UGuGG-CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3827 0.66 0.572412
Target:  5'- uGCCgcgggCCCGgGCGCUgGCggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGG-----GGGCaUGUGG-CGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 106971 0.66 0.572412
Target:  5'- cGCCUCgGcgcgcGCGCCGCgcaccGCGUCGGCc- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGa----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 123576 1.07 0.000759
Target:  5'- gGCCCCCGUACACCGCUGCGCCGGCUAc -3'
miRNA:   3'- -CGGGGGCAUGUGGCGACGCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 64816 0.66 0.582201
Target:  5'- cGCgCgCGcGCGCCGC-GCGCCGGg-- -3'
miRNA:   3'- -CGgGgGCaUGUGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 35662 0.66 0.582201
Target:  5'- cGCUCCCGcucccUGCcgGCCGCaccccCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC-----AUG--UGGCGac---GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 2541 0.66 0.582201
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 103373 0.66 0.582201
Target:  5'- aGCUCggCCGcGCGCCGCcGCGCCgcGGCc- -3'
miRNA:   3'- -CGGG--GGCaUGUGGCGaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 75867 0.66 0.582201
Target:  5'- cGgCCCCGacgGCGCCGUggGCGCgcgcagCGGCg- -3'
miRNA:   3'- -CgGGGGCa--UGUGGCGa-CGCG------GCCGau -5'
23566 3' -63 NC_005261.1 + 32417 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 39335 0.66 0.582201
Target:  5'- cGCCgCCGcgGCcaaGCUGCGCgCGGCg- -3'
miRNA:   3'- -CGGgGGCa-UGuggCGACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 76106 0.66 0.582201
Target:  5'- aGCUggagaaCCGc-CACCGCgccGCGCCGGCg- -3'
miRNA:   3'- -CGGg-----GGCauGUGGCGa--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 104982 0.66 0.582201
Target:  5'- uCCCCCGccccgGCGCC-CaGCGCgGGCg- -3'
miRNA:   3'- cGGGGGCa----UGUGGcGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 32181 0.66 0.582201
Target:  5'- gGCCUgCGggcgGCGCgCGCUGgaGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUG-GCGACg-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 84665 0.66 0.582201
Target:  5'- cGCCgCCCGcGC-CCGCgGCcgcgcacacgaaGCCGGCg- -3'
miRNA:   3'- -CGG-GGGCaUGuGGCGaCG------------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 78020 0.66 0.582201
Target:  5'- cGCCgCagcaGUACGCCGCUccGCcccaGCCGGUg- -3'
miRNA:   3'- -CGGgGg---CAUGUGGCGA--CG----CGGCCGau -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 117656 0.66 0.572412
Target:  5'- cCCCCCGcuaaGCGCCccGCcGCGCCcGGCc- -3'
miRNA:   3'- cGGGGGCa---UGUGG--CGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 67942 0.66 0.582201
Target:  5'- cCCCCCGccgGC-CCGCU-CGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGuGGCGAcGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 29790 0.66 0.582201
Target:  5'- gGCCuaCCCGgaggccgGCGCCgGCgGCGCgGGCg- -3'
miRNA:   3'- -CGG--GGGCa------UGUGG-CGaCGCGgCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.