miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 6438 0.68 0.714127
Target:  5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3'
miRNA:   3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5'
23566 5' -57.1 NC_005261.1 + 88816 0.67 0.754027
Target:  5'- cGGCGGCGGGgcggCGGcGCgcgccgGCCCGgcgUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUC-CGa-----CGGGU---AGUC- -5'
23566 5' -57.1 NC_005261.1 + 23805 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 9624 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 123236 0.7 0.579486
Target:  5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3'
miRNA:   3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 12769 0.69 0.66269
Target:  5'- aGGCGGC-GGUggCGGGggGCUCGUCGGc -3'
miRNA:   3'- -UCGUCGuCCAa-GUCCgaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 99227 0.67 0.773347
Target:  5'- cGCGGCAGGcgCGucGGCgucgcGCCCGcCGGg -3'
miRNA:   3'- uCGUCGUCCaaGU--CCGa----CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 82295 0.66 0.827868
Target:  5'- uGCAGCGcccg-AGGCUGUCCAUCGa -3'
miRNA:   3'- uCGUCGUccaagUCCGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 107260 0.68 0.683406
Target:  5'- gGGCGcGCGGGcaCGGGCgggcGCgCAUCAGg -3'
miRNA:   3'- -UCGU-CGUCCaaGUCCGa---CGgGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 60069 0.66 0.827868
Target:  5'- cGGCGGCcGGUccgCGGGCUGCgUGggCAGc -3'
miRNA:   3'- -UCGUCGuCCAa--GUCCGACGgGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 23562 0.67 0.773347
Target:  5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaGU-CCGACgGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 121500 0.68 0.703947
Target:  5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 93383 0.66 0.792143
Target:  5'- gAGCAGgAGGUUgCAGaGCacgcacucGCCCGUCGu -3'
miRNA:   3'- -UCGUCgUCCAA-GUC-CGa-------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 9141 0.66 0.800411
Target:  5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3'
miRNA:   3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 136572 0.66 0.801322
Target:  5'- aGGC-GCGGGUgggCGGGCgcagagacGCCCGgcgCAGc -3'
miRNA:   3'- -UCGuCGUCCAa--GUCCGa-------CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 46060 0.66 0.827868
Target:  5'- gGGCAGCGGGaa-GGGCgccGCCUcgUGGc -3'
miRNA:   3'- -UCGUCGUCCaagUCCGa--CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 2612 0.71 0.538571
Target:  5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5'
23566 5' -57.1 NC_005261.1 + 4447 0.7 0.569182
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 129733 0.7 0.589829
Target:  5'- cAGCGGCAGGgc--GGCgggGCCCGgccuUCAGc -3'
miRNA:   3'- -UCGUCGUCCaaguCCGa--CGGGU----AGUC- -5'
23566 5' -57.1 NC_005261.1 + 50522 0.69 0.641871
Target:  5'- cGCAGCAGGgccgucgUCuuGCccgaGCCCAUCGGc -3'
miRNA:   3'- uCGUCGUCCa------AGucCGa---CGGGUAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.