miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 112052 0.66 0.827868
Target:  5'- cGGgAGCcGGccUUCGGGCgUGCCCucGUCGGc -3'
miRNA:   3'- -UCgUCGuCC--AAGUCCG-ACGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 99227 0.67 0.773347
Target:  5'- cGCGGCAGGcgCGucGGCgucgcGCCCGcCGGg -3'
miRNA:   3'- uCGUCGUCCaaGU--CCGa----CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 88816 0.67 0.754027
Target:  5'- cGGCGGCGGGgcggCGGcGCgcgccgGCCCGgcgUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUC-CGa-----CGGGU---AGUC- -5'
23566 5' -57.1 NC_005261.1 + 123610 1.08 0.001953
Target:  5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 46060 0.66 0.827868
Target:  5'- gGGCAGCGGGaa-GGGCgccGCCUcgUGGc -3'
miRNA:   3'- -UCGUCGUCCaagUCCGa--CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 50344 0.66 0.810341
Target:  5'- cAGCAGCcgccGGU--AGGCcgcGCCCGUCAu -3'
miRNA:   3'- -UCGUCGu---CCAagUCCGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 136572 0.66 0.801322
Target:  5'- aGGC-GCGGGUgggCGGGCgcagagacGCCCGgcgCAGc -3'
miRNA:   3'- -UCGuCGUCCAa--GUCCGa-------CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 98199 0.66 0.801322
Target:  5'- cGCGGCGGGcagCGGGCgccGCCaCggCAGc -3'
miRNA:   3'- uCGUCGUCCaa-GUCCGa--CGG-GuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 9141 0.66 0.800411
Target:  5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3'
miRNA:   3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 107724 0.67 0.773347
Target:  5'- cGCGGCAGGc---GGCUGCgCC-UCGGc -3'
miRNA:   3'- uCGUCGUCCaaguCCGACG-GGuAGUC- -5'
23566 5' -57.1 NC_005261.1 + 15299 0.66 0.792143
Target:  5'- cGCGGCcuccGGGUcgUCGGaGCcggGCCCGUCGa -3'
miRNA:   3'- uCGUCG----UCCA--AGUC-CGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 23805 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 60069 0.66 0.827868
Target:  5'- cGGCGGCcGGUccgCGGGCUGCgUGggCAGc -3'
miRNA:   3'- -UCGUCGuCCAa--GUCCGACGgGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 93383 0.66 0.792143
Target:  5'- gAGCAGgAGGUUgCAGaGCacgcacucGCCCGUCGu -3'
miRNA:   3'- -UCGUCgUCCAA-GUC-CGa-------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 82295 0.66 0.827868
Target:  5'- uGCAGCGcccg-AGGCUGUCCAUCGa -3'
miRNA:   3'- uCGUCGUccaagUCCGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 23862 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 33616 0.66 0.792143
Target:  5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3'
miRNA:   3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5'
23566 5' -57.1 NC_005261.1 + 23562 0.67 0.773347
Target:  5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaGU-CCGACgGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 9624 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 23631 0.66 0.810341
Target:  5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3'
miRNA:   3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.