miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 39313 0.66 0.8187
Target:  5'- cGCGGUUCCucgcguccaACCgCGCCGCcgcgGCCa -3'
miRNA:   3'- aUGUCGAGGuac------UGG-GCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 103562 0.66 0.809947
Target:  5'- aGgGGCcCCGUGcCgCCGCCGCccgcGCCg -3'
miRNA:   3'- aUgUCGaGGUACuG-GGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 42617 0.66 0.80103
Target:  5'- cGCGGCgcaaagUCCAgcgggGACUCgGCCGCcgcgGCCg -3'
miRNA:   3'- aUGUCG------AGGUa----CUGGG-CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 123388 1.1 0.001209
Target:  5'- gUACAGCUCCAUGACCCGCCGCUUGCCg -3'
miRNA:   3'- -AUGUCGAGGUACUGGGCGGCGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 70538 0.66 0.8187
Target:  5'- gGCGGCgcccgcgCCcc-ACCCGCCGCagggcGCCg -3'
miRNA:   3'- aUGUCGa------GGuacUGGGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 51920 0.66 0.8187
Target:  5'- cGCAGCggCCGcGGCCUGgucCCGCUcgucGCCg -3'
miRNA:   3'- aUGUCGa-GGUaCUGGGC---GGCGAa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 11928 0.66 0.8187
Target:  5'- gGCGGCUgCGgcGGCCCgcGCCGCggcgGCUc -3'
miRNA:   3'- aUGUCGAgGUa-CUGGG--CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 36572 0.66 0.8187
Target:  5'- --gAGCUgagCGggGGCCCGCCGCg-GCCa -3'
miRNA:   3'- augUCGAg--GUa-CUGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 102638 0.66 0.809947
Target:  5'- cGCGGCUUCGUccgcGGCCCGCagcaccuccucCGCggcGCCc -3'
miRNA:   3'- aUGUCGAGGUA----CUGGGCG-----------GCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 107994 0.66 0.809947
Target:  5'- ---uGCUCCA--GCCCGCCGUcggGCa -3'
miRNA:   3'- auguCGAGGUacUGGGCGGCGaa-CGg -5'
23567 3' -57.7 NC_005261.1 + 28878 0.66 0.809947
Target:  5'- cUGCGGCgcg--GACgCCGCCGCcUGCg -3'
miRNA:   3'- -AUGUCGagguaCUG-GGCGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 15299 0.66 0.813469
Target:  5'- cGCGGcCUCCGggucgucggagccgGGCCCGUCGaa-GCCg -3'
miRNA:   3'- aUGUC-GAGGUa-------------CUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 33309 0.66 0.8187
Target:  5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3'
miRNA:   3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 2221 0.66 0.809947
Target:  5'- aGCAGgUgCGaGAgCCCGCCGCgcaccggcgGCCa -3'
miRNA:   3'- aUGUCgAgGUaCU-GGGCGGCGaa-------CGG- -5'
23567 3' -57.7 NC_005261.1 + 32264 0.66 0.8187
Target:  5'- aGCcGCacgCCGaGGCgCCGCCGCUggUGCUg -3'
miRNA:   3'- aUGuCGa--GGUaCUG-GGCGGCGA--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 131753 0.66 0.816963
Target:  5'- gACGGCacgCCGgccggcgcggcgGGCgCGCCGCUggGCCc -3'
miRNA:   3'- aUGUCGa--GGUa-----------CUGgGCGGCGAa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 123038 0.66 0.809947
Target:  5'- gGCAGCaggcaccccuUCUcUG-CCCGCCGCUcgaugagGCCc -3'
miRNA:   3'- aUGUCG----------AGGuACuGGGCGGCGAa------CGG- -5'
23567 3' -57.7 NC_005261.1 + 54378 0.66 0.809947
Target:  5'- aGCGGCUCgGggcGCCCGCgaagGCcgUGCCg -3'
miRNA:   3'- aUGUCGAGgUac-UGGGCGg---CGa-ACGG- -5'
23567 3' -57.7 NC_005261.1 + 95493 0.66 0.8187
Target:  5'- cGCGGCggCAUcGACCCGCgGCcauuccgcGCCa -3'
miRNA:   3'- aUGUCGagGUA-CUGGGCGgCGaa------CGG- -5'
23567 3' -57.7 NC_005261.1 + 20135 0.66 0.8187
Target:  5'- aGCGGCUCCGcgagcgcucaGGCCgCGCCgGCUcucUGCUc -3'
miRNA:   3'- aUGUCGAGGUa---------CUGG-GCGG-CGA---ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.