Results 1 - 20 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 120253 | 0.65 | 0.44277 |
Target: 5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3' miRNA: 3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 109885 | 0.66 | 0.44021 |
Target: 5'- gCGGGCgggCGCCcCGGGgcuacagccccuggaCCGCcgggauGCUGCAc -3' miRNA: 3'- -GCCCGa--GCGGuGCCC---------------GGCGu-----CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 84684 | 0.66 | 0.44021 |
Target: 5'- uGGGC-CGCgGCGcGGCCgaagagcgcaacacgGCAGCCaCAg -3' miRNA: 3'- gCCCGaGCGgUGC-CCGG---------------CGUCGGcGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 50232 | 0.66 | 0.436809 |
Target: 5'- aCGGGCcCGCCGgGGGa-GgAGCCGg- -3' miRNA: 3'- -GCCCGaGCGGUgCCCggCgUCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 135478 | 0.66 | 0.436809 |
Target: 5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3' miRNA: 3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 40458 | 0.66 | 0.436809 |
Target: 5'- gGGGCUCGggagucgaUGCcGGCCGC-GCCGCc -3' miRNA: 3'- gCCCGAGCg-------GUGcCCGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 109713 | 0.66 | 0.436809 |
Target: 5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3' miRNA: 3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 134839 | 0.66 | 0.436809 |
Target: 5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3' miRNA: 3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 9430 | 0.66 | 0.436809 |
Target: 5'- gCGaGCccCGCCGCGGGCC-CGGgCGCc -3' miRNA: 3'- -GCcCGa-GCGGUGCCCGGcGUCgGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 134111 | 0.66 | 0.436809 |
Target: 5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3' miRNA: 3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 2891 | 0.66 | 0.436809 |
Target: 5'- gGGGCgaacCGCUcCGGGCCaaaguccaGCAcgGCCGCc -3' miRNA: 3'- gCCCGa---GCGGuGCCCGG--------CGU--CGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 49406 | 0.66 | 0.436809 |
Target: 5'- cCGGGC-CGgCGCGcGCCGCcgcccccGCCGCc -3' miRNA: 3'- -GCCCGaGCgGUGCcCGGCGu------CGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 7570 | 0.66 | 0.436809 |
Target: 5'- gGGGCUCGCCGa-GGa-GCAGCgCGUc -3' miRNA: 3'- gCCCGAGCGGUgcCCggCGUCG-GCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 118262 | 0.66 | 0.436809 |
Target: 5'- aGGGCg-GUCGCu-GCCGCAGCCGa- -3' miRNA: 3'- gCCCGagCGGUGccCGGCGUCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 75928 | 0.66 | 0.436809 |
Target: 5'- gGGGC-CGCCGCGcGcCCGC-GCgGCGc -3' miRNA: 3'- gCCCGaGCGGUGCcC-GGCGuCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 108009 | 0.66 | 0.436809 |
Target: 5'- gGGGCcacgguucgCGCCgccaGCGcGGCCGCcuccagcgcggcGGCCGCc -3' miRNA: 3'- gCCCGa--------GCGG----UGC-CCGGCG------------UCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 30322 | 0.66 | 0.436809 |
Target: 5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3' miRNA: 3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 118426 | 0.66 | 0.436809 |
Target: 5'- -uGGCUgucgcCGCCGCGGacGCCGCcGCgGCGc -3' miRNA: 3'- gcCCGA-----GCGGUGCC--CGGCGuCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 80004 | 0.66 | 0.436809 |
Target: 5'- aGGaccccGC-CGCCGCGGGCgCGCugcuGGCgCGCGc -3' miRNA: 3'- gCC-----CGaGCGGUGCCCG-GCG----UCG-GCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 54380 | 0.66 | 0.436809 |
Target: 5'- -cGGCccaGCCcaGCGGgGCCGCGGcCCGCc -3' miRNA: 3'- gcCCGag-CGG--UGCC-CGGCGUC-GGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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