miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 120253 0.65 0.44277
Target:  5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3'
miRNA:   3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109885 0.66 0.44021
Target:  5'- gCGGGCgggCGCCcCGGGgcuacagccccuggaCCGCcgggauGCUGCAc -3'
miRNA:   3'- -GCCCGa--GCGGuGCCC---------------GGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84684 0.66 0.44021
Target:  5'- uGGGC-CGCgGCGcGGCCgaagagcgcaacacgGCAGCCaCAg -3'
miRNA:   3'- gCCCGaGCGgUGC-CCGG---------------CGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 9430 0.66 0.436809
Target:  5'- gCGaGCccCGCCGCGGGCC-CGGgCGCc -3'
miRNA:   3'- -GCcCGa-GCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 118426 0.66 0.436809
Target:  5'- -uGGCUgucgcCGCCGCGGacGCCGCcGCgGCGc -3'
miRNA:   3'- gcCCGA-----GCGGUGCC--CGGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 2891 0.66 0.436809
Target:  5'- gGGGCgaacCGCUcCGGGCCaaaguccaGCAcgGCCGCc -3'
miRNA:   3'- gCCCGa---GCGGuGCCCGG--------CGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 108009 0.66 0.436809
Target:  5'- gGGGCcacgguucgCGCCgccaGCGcGGCCGCcuccagcgcggcGGCCGCc -3'
miRNA:   3'- gCCCGa--------GCGG----UGC-CCGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 134111 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 40458 0.66 0.436809
Target:  5'- gGGGCUCGggagucgaUGCcGGCCGC-GCCGCc -3'
miRNA:   3'- gCCCGAGCg-------GUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 135478 0.66 0.436809
Target:  5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3'
miRNA:   3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109713 0.66 0.436809
Target:  5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3'
miRNA:   3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134839 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 49406 0.66 0.436809
Target:  5'- cCGGGC-CGgCGCGcGCCGCcgcccccGCCGCc -3'
miRNA:   3'- -GCCCGaGCgGUGCcCGGCGu------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 30322 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 80004 0.66 0.436809
Target:  5'- aGGaccccGC-CGCCGCGGGCgCGCugcuGGCgCGCGc -3'
miRNA:   3'- gCC-----CGaGCGGUGCCCG-GCG----UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 118262 0.66 0.436809
Target:  5'- aGGGCg-GUCGCu-GCCGCAGCCGa- -3'
miRNA:   3'- gCCCGagCGGUGccCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 50232 0.66 0.436809
Target:  5'- aCGGGCcCGCCGgGGGa-GgAGCCGg- -3'
miRNA:   3'- -GCCCGaGCGGUgCCCggCgUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 54380 0.66 0.436809
Target:  5'- -cGGCccaGCCcaGCGGgGCCGCGGcCCGCc -3'
miRNA:   3'- gcCCGag-CGG--UGCC-CGGCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 75928 0.66 0.436809
Target:  5'- gGGGC-CGCCGCGcGcCCGC-GCgGCGc -3'
miRNA:   3'- gCCCGaGCGGUGCcC-GGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 7570 0.66 0.436809
Target:  5'- gGGGCUCGCCGa-GGa-GCAGCgCGUc -3'
miRNA:   3'- gCCCGAGCGGUgcCCggCGUCG-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.