miRNA display CGI


Results 61 - 80 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 137152 0.75 0.099083
Target:  5'- cCGGGCUCGCCcuggaGCGGGgccagccccCCGC-GCCGCu -3'
miRNA:   3'- -GCCCGAGCGG-----UGCCC---------GGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 100675 0.75 0.099083
Target:  5'- gGGGUUCGCgCGCGagugcaccgcGGCCGCGGCgCGCGc -3'
miRNA:   3'- gCCCGAGCG-GUGC----------CCGGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 12326 0.75 0.099083
Target:  5'- gCGGGCgcgCGCUuggccgGCGcGGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCGa--GCGG------UGC-CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 32635 0.75 0.099083
Target:  5'- cCGGGCUCGCCcuggaGCGGGgccagccccCCGC-GCCGCu -3'
miRNA:   3'- -GCCCGAGCGG-----UGCCC---------GGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 4865 0.75 0.099083
Target:  5'- aGGGCggcgGCCACGacGGCCGCcucAGCCGCGg -3'
miRNA:   3'- gCCCGag--CGGUGC--CCGGCG---UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 83568 0.75 0.099083
Target:  5'- gCGGGCgUGcCCGCGGcGcCCGCGGCCGCc -3'
miRNA:   3'- -GCCCGaGC-GGUGCC-C-GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 35573 0.75 0.100573
Target:  5'- uGGGCgccgcggaggaggUGCUGCGGGCCGCggacgaAGCCGCGg -3'
miRNA:   3'- gCCCGa------------GCGGUGCCCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 54126 0.75 0.101578
Target:  5'- gCGGGCUCGucCCACGGcacGCCGCacgcGGCCGUg -3'
miRNA:   3'- -GCCCGAGC--GGUGCC---CGGCG----UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 35690 0.75 0.101578
Target:  5'- cCGGGC--GCCugGGGCCGCAggcggccaaGCUGCAc -3'
miRNA:   3'- -GCCCGagCGGugCCCGGCGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134200 0.75 0.101578
Target:  5'- gCGcGGCUCgGCgCGCGGGUCGCGGCgGCc -3'
miRNA:   3'- -GC-CCGAG-CG-GUGCCCGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 98837 0.75 0.103875
Target:  5'- gGGGCucgggUCGCCGCcaGGGCCGCccuccccGGCCGCc -3'
miRNA:   3'- gCCCG-----AGCGGUG--CCCGGCG-------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133934 0.75 0.104133
Target:  5'- aCGcGGCg-GCCGCGGGgcCCGCGGCCGUg -3'
miRNA:   3'- -GC-CCGagCGGUGCCC--GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7040 0.75 0.104133
Target:  5'- gGcGGCgaccgCGCCGCGGG-CGUAGCCGCu -3'
miRNA:   3'- gC-CCGa----GCGGUGCCCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 95713 0.75 0.104133
Target:  5'- gCGGGCUCGCgCuCGGGCC-C-GCCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GuGCCCGGcGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29417 0.75 0.104133
Target:  5'- aCGcGGCg-GCCGCGGGgcCCGCGGCCGUg -3'
miRNA:   3'- -GC-CCGagCGGUGCCC--GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 20294 0.75 0.104133
Target:  5'- --aGCgagCGCgCACGGGCCGCAGCCGg- -3'
miRNA:   3'- gccCGa--GCG-GUGCCCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 72740 0.75 0.105957
Target:  5'- gCGGGCggccCGCaugGCGGGCCGCaugcccagcacggcGGCCGCGc -3'
miRNA:   3'- -GCCCGa---GCGg--UGCCCGGCG--------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 118060 0.75 0.106748
Target:  5'- -uGGCg-GCCGCGgcagcGGCCGCAGCCGCGc -3'
miRNA:   3'- gcCCGagCGGUGC-----CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 44776 0.75 0.106748
Target:  5'- gCGGGa--GCCGCa-GCCGCAGCCGCAg -3'
miRNA:   3'- -GCCCgagCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 42679 0.75 0.109424
Target:  5'- cCGGGC-CGCCGCcGGCagccgCGCGGCCGCc -3'
miRNA:   3'- -GCCCGaGCGGUGcCCG-----GCGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.