miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 31581 0.66 0.901019
Target:  5'- gCGCGccggACGUGagcgcgcucGGCGCGcAGGGCGUg- -3'
miRNA:   3'- -GCGCa---UGCAC---------CCGCGCuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 100488 0.66 0.901019
Target:  5'- gCGCGgcgcccGCGggGGGCGaCGggGGGC-UCc -3'
miRNA:   3'- -GCGCa-----UGCa-CCCGC-GCuuCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 136098 0.66 0.901019
Target:  5'- gCGCGccggACGUGagcgcgcucGGCGCGcAGGGCGUg- -3'
miRNA:   3'- -GCGCa---UGCAC---------CCGCGCuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 15530 0.66 0.901019
Target:  5'- gCGCGgcCG-GcGGCGCGGcgauGGAGCAggcgCAg -3'
miRNA:   3'- -GCGCauGCaC-CCGCGCU----UCUCGUa---GU- -5'
23568 3' -55.6 NC_005261.1 + 41893 0.66 0.897128
Target:  5'- gGCGUcAgGUGcGCGCGGccgcgcaggccagucAGGGCGUCAg -3'
miRNA:   3'- gCGCA-UgCACcCGCGCU---------------UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 67665 0.66 0.894487
Target:  5'- cCGCGcGCGgcgccaGGCGCGguGAGCgcGUCAa -3'
miRNA:   3'- -GCGCaUGCac----CCGCGCuuCUCG--UAGU- -5'
23568 3' -55.6 NC_005261.1 + 59059 0.66 0.894487
Target:  5'- aGCGcGCGcGGcCGCGGAGAGCGc-- -3'
miRNA:   3'- gCGCaUGCaCCcGCGCUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 15030 0.66 0.894487
Target:  5'- gCGgGUGCcggGGGCguaGCGggGGGgGUCGg -3'
miRNA:   3'- -GCgCAUGca-CCCG---CGCuuCUCgUAGU- -5'
23568 3' -55.6 NC_005261.1 + 108908 0.66 0.894487
Target:  5'- gGCGaGCG-GGGCGCGggGucggggcccAGCAc-- -3'
miRNA:   3'- gCGCaUGCaCCCGCGCuuC---------UCGUagu -5'
23568 3' -55.6 NC_005261.1 + 65169 0.66 0.894487
Target:  5'- gGCGaacACGUGcgccuuccuaGGCGCGggGGGCGc-- -3'
miRNA:   3'- gCGCa--UGCAC----------CCGCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 18184 0.66 0.894487
Target:  5'- aGCGcaggcGCGUGGaGCGCGgcGGGUAg-- -3'
miRNA:   3'- gCGCa----UGCACC-CGCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 87620 0.66 0.890456
Target:  5'- cCGCG-ACGuUGGGCGCGAAcgccgccuccacgguGAGCccgCGc -3'
miRNA:   3'- -GCGCaUGC-ACCCGCGCUU---------------CUCGua-GU- -5'
23568 3' -55.6 NC_005261.1 + 127756 0.66 0.887722
Target:  5'- aGCGggccGCGgcGGGCGCGAAGAcGCc--- -3'
miRNA:   3'- gCGCa---UGCa-CCCGCGCUUCU-CGuagu -5'
23568 3' -55.6 NC_005261.1 + 19027 0.66 0.887722
Target:  5'- aGCGUcGCG-GGGCaGcCGGAGAGCcgCc -3'
miRNA:   3'- gCGCA-UGCaCCCG-C-GCUUCUCGuaGu -5'
23568 3' -55.6 NC_005261.1 + 1022 0.66 0.887722
Target:  5'- gGCGg--GUGGGCuuuuGCGGAGGGCGg-- -3'
miRNA:   3'- gCGCaugCACCCG----CGCUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 46031 0.66 0.887722
Target:  5'- aGCaggACGgGGGCGCGGuAGAGgGUCc -3'
miRNA:   3'- gCGca-UGCaCCCGCGCU-UCUCgUAGu -5'
23568 3' -55.6 NC_005261.1 + 103149 0.66 0.887722
Target:  5'- cCGCGgcuccgaggGCGaggGGGCGCGGAGAccGCcgCc -3'
miRNA:   3'- -GCGCa--------UGCa--CCCGCGCUUCU--CGuaGu -5'
23568 3' -55.6 NC_005261.1 + 105540 0.66 0.887722
Target:  5'- gGCGg--GUGGGCuuuuGCGGAGGGCGg-- -3'
miRNA:   3'- gCGCaugCACCCG----CGCUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 63567 0.66 0.887722
Target:  5'- gCGCGgcCGgcaugaUGGGCcCGAAGAGCGgcgCGg -3'
miRNA:   3'- -GCGCauGC------ACCCGcGCUUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 133715 0.67 0.880729
Target:  5'- cCGCGgcgcccGCGcgGGGCGCGAcuGGGGCccgcgCAg -3'
miRNA:   3'- -GCGCa-----UGCa-CCCGCGCU--UCUCGua---GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.