miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 137887 0.71 0.350333
Target:  5'- gGCcGCGCCggGCUgCGggcCGCCGCaGCCGc -3'
miRNA:   3'- -CGaCGCGGa-CGAgGUa--GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 137859 0.67 0.528035
Target:  5'- gGCUgGCGCCccuggUGCUCCcggggccagcggUGCCGCcGCCGc -3'
miRNA:   3'- -CGA-CGCGG-----ACGAGGua----------GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 137840 0.7 0.381412
Target:  5'- cGCUGcCGCC-GCcgCCGcCGCCGcCGCCa -3'
miRNA:   3'- -CGAC-GCGGaCGa-GGUaGCGGC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 137779 0.68 0.457712
Target:  5'- gGC-GCGCCcccggGCcCCGcCGcCCGCGCCGg -3'
miRNA:   3'- -CGaCGCGGa----CGaGGUaGC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 136815 0.67 0.541447
Target:  5'- gGCggGCGCC-GCccccgCCGcCGCCGCgGCCGc -3'
miRNA:   3'- -CGa-CGCGGaCGa----GGUaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 136722 0.68 0.457712
Target:  5'- aGCUGCGCCcgacgaGCUgCCG--GCCGCGgCGg -3'
miRNA:   3'- -CGACGCGGa-----CGA-GGUagCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 136441 0.67 0.531854
Target:  5'- --gGCGCCgccgcugcgGCUCUGcCGCgGCGCCa -3'
miRNA:   3'- cgaCGCGGa--------CGAGGUaGCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 136387 0.66 0.590159
Target:  5'- --cGgGCCcgGCgCCuUCGCgCGCGCCGa -3'
miRNA:   3'- cgaCgCGGa-CGaGGuAGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 135801 0.66 0.580335
Target:  5'- cGCUG-GCCgagaucgcgGC-CCGcCGCCGCGCgGg -3'
miRNA:   3'- -CGACgCGGa--------CGaGGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 134702 0.66 0.590159
Target:  5'- nGC-GCGCCgagGCggc--CGCCGCGCUGg -3'
miRNA:   3'- -CGaCGCGGa--CGagguaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134680 0.68 0.457712
Target:  5'- aGCgGCGCC-GCgCC--CGCCGCGCUGc -3'
miRNA:   3'- -CGaCGCGGaCGaGGuaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134438 0.68 0.457712
Target:  5'- gGCUGCGCgaGCUggCGgacCGCUGCGCUGc -3'
miRNA:   3'- -CGACGCGgaCGAg-GUa--GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134360 0.73 0.250267
Target:  5'- aGCUgcGCGCCgUGCUcgCCGgccgCGCgGCGCCGg -3'
miRNA:   3'- -CGA--CGCGG-ACGA--GGUa---GCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134319 0.71 0.342849
Target:  5'- gGCcgGCGCCggcgGCgcgggcgCCcgCGCCGCGCUc -3'
miRNA:   3'- -CGa-CGCGGa---CGa------GGuaGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 134288 0.66 0.619775
Target:  5'- uCUGgGCgUgGgUCCAcgucgccgccuUCGCCGCGCUGg -3'
miRNA:   3'- cGACgCGgA-CgAGGU-----------AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134207 0.68 0.457712
Target:  5'- cGCUGCcgcacguggcgGCCUGCguggCCAUgagcCGCCGCuaCGa -3'
miRNA:   3'- -CGACG-----------CGGACGa---GGUA----GCGGCGcgGC- -5'
23568 5' -62.2 NC_005261.1 + 134159 0.68 0.484912
Target:  5'- cGCUGcCGCCgGUcggggacgCCAUgGCCGCGCa- -3'
miRNA:   3'- -CGAC-GCGGaCGa-------GGUAgCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 134146 0.66 0.609885
Target:  5'- gGCUGCGCCUgGCgccacCCGggGCUGCuGCUc -3'
miRNA:   3'- -CGACGCGGA-CGa----GGUagCGGCG-CGGc -5'
23568 5' -62.2 NC_005261.1 + 134086 0.68 0.503467
Target:  5'- -aUGUGCgaGCUC--UCGgCGCGCCGg -3'
miRNA:   3'- cgACGCGgaCGAGguAGCgGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134081 0.68 0.484912
Target:  5'- aGCUggcGCGCCUGCUgCAgCGgCGCGUg- -3'
miRNA:   3'- -CGA---CGCGGACGAgGUaGCgGCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.