Results 1 - 20 of 589 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 5' | -62.2 | NC_005261.1 | + | 137887 | 0.71 | 0.350333 |
Target: 5'- gGCcGCGCCggGCUgCGggcCGCCGCaGCCGc -3' miRNA: 3'- -CGaCGCGGa-CGAgGUa--GCGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 137859 | 0.67 | 0.528035 |
Target: 5'- gGCUgGCGCCccuggUGCUCCcggggccagcggUGCCGCcGCCGc -3' miRNA: 3'- -CGA-CGCGG-----ACGAGGua----------GCGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 137840 | 0.7 | 0.381412 |
Target: 5'- cGCUGcCGCC-GCcgCCGcCGCCGcCGCCa -3' miRNA: 3'- -CGAC-GCGGaCGa-GGUaGCGGC-GCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 137779 | 0.68 | 0.457712 |
Target: 5'- gGC-GCGCCcccggGCcCCGcCGcCCGCGCCGg -3' miRNA: 3'- -CGaCGCGGa----CGaGGUaGC-GGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 136815 | 0.67 | 0.541447 |
Target: 5'- gGCggGCGCC-GCccccgCCGcCGCCGCgGCCGc -3' miRNA: 3'- -CGa-CGCGGaCGa----GGUaGCGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 136722 | 0.68 | 0.457712 |
Target: 5'- aGCUGCGCCcgacgaGCUgCCG--GCCGCGgCGg -3' miRNA: 3'- -CGACGCGGa-----CGA-GGUagCGGCGCgGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 136441 | 0.67 | 0.531854 |
Target: 5'- --gGCGCCgccgcugcgGCUCUGcCGCgGCGCCa -3' miRNA: 3'- cgaCGCGGa--------CGAGGUaGCGgCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 136387 | 0.66 | 0.590159 |
Target: 5'- --cGgGCCcgGCgCCuUCGCgCGCGCCGa -3' miRNA: 3'- cgaCgCGGa-CGaGGuAGCG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 135801 | 0.66 | 0.580335 |
Target: 5'- cGCUG-GCCgagaucgcgGC-CCGcCGCCGCGCgGg -3' miRNA: 3'- -CGACgCGGa--------CGaGGUaGCGGCGCGgC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134702 | 0.66 | 0.590159 |
Target: 5'- nGC-GCGCCgagGCggc--CGCCGCGCUGg -3' miRNA: 3'- -CGaCGCGGa--CGagguaGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134680 | 0.68 | 0.457712 |
Target: 5'- aGCgGCGCC-GCgCC--CGCCGCGCUGc -3' miRNA: 3'- -CGaCGCGGaCGaGGuaGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134438 | 0.68 | 0.457712 |
Target: 5'- gGCUGCGCgaGCUggCGgacCGCUGCGCUGc -3' miRNA: 3'- -CGACGCGgaCGAg-GUa--GCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134360 | 0.73 | 0.250267 |
Target: 5'- aGCUgcGCGCCgUGCUcgCCGgccgCGCgGCGCCGg -3' miRNA: 3'- -CGA--CGCGG-ACGA--GGUa---GCGgCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134319 | 0.71 | 0.342849 |
Target: 5'- gGCcgGCGCCggcgGCgcgggcgCCcgCGCCGCGCUc -3' miRNA: 3'- -CGa-CGCGGa---CGa------GGuaGCGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134288 | 0.66 | 0.619775 |
Target: 5'- uCUGgGCgUgGgUCCAcgucgccgccuUCGCCGCGCUGg -3' miRNA: 3'- cGACgCGgA-CgAGGU-----------AGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134207 | 0.68 | 0.457712 |
Target: 5'- cGCUGCcgcacguggcgGCCUGCguggCCAUgagcCGCCGCuaCGa -3' miRNA: 3'- -CGACG-----------CGGACGa---GGUA----GCGGCGcgGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134159 | 0.68 | 0.484912 |
Target: 5'- cGCUGcCGCCgGUcggggacgCCAUgGCCGCGCa- -3' miRNA: 3'- -CGAC-GCGGaCGa-------GGUAgCGGCGCGgc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134146 | 0.66 | 0.609885 |
Target: 5'- gGCUGCGCCUgGCgccacCCGggGCUGCuGCUc -3' miRNA: 3'- -CGACGCGGA-CGa----GGUagCGGCG-CGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134086 | 0.68 | 0.503467 |
Target: 5'- -aUGUGCgaGCUC--UCGgCGCGCCGg -3' miRNA: 3'- cgACGCGgaCGAGguAGCgGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 134081 | 0.68 | 0.484912 |
Target: 5'- aGCUggcGCGCCUGCUgCAgCGgCGCGUg- -3' miRNA: 3'- -CGA---CGCGGACGAgGUaGCgGCGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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