Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23569 | 5' | -50.9 | NC_005261.1 | + | 109775 | 0.66 | 0.991076 |
Target: 5'- cGCCGUCucGgGcGUCCc--GGCCGCu -3' miRNA: 3'- aCGGCAGuuCgCaCAGGuauUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 7776 | 0.66 | 0.989777 |
Target: 5'- aGCCGcUCGGGCcaGUCguaggAGACCACg -3' miRNA: 3'- aCGGC-AGUUCGcaCAGgua--UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 4897 | 0.66 | 0.989777 |
Target: 5'- cGCCGcgCGcGCGUG-CCGgcagGAGCUGCg -3' miRNA: 3'- aCGGCa-GUuCGCACaGGUa---UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 70873 | 0.66 | 0.989777 |
Target: 5'- cGCCGU--GGCGUGgCCGgcgGugCACa -3' miRNA: 3'- aCGGCAguUCGCACaGGUau-UugGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 12620 | 0.66 | 0.989777 |
Target: 5'- cGCCGcCAccacGGUGUaGUCCGgcgcggucugGGGCCGCg -3' miRNA: 3'- aCGGCaGU----UCGCA-CAGGUa---------UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 77075 | 0.66 | 0.988334 |
Target: 5'- gGCCGUCgAGGCGgcgCCGgugcacGGCCAUg -3' miRNA: 3'- aCGGCAG-UUCGCacaGGUau----UUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 68509 | 0.66 | 0.988334 |
Target: 5'- cGCUGaugCAGGCGUGccugCCGgc-GCCGCc -3' miRNA: 3'- aCGGCa--GUUCGCACa---GGUauuUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 53049 | 0.66 | 0.988334 |
Target: 5'- aGCCGUCGGGagggcaGUGcUCCAccccgGGGCgGCg -3' miRNA: 3'- aCGGCAGUUCg-----CAC-AGGUa----UUUGgUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 67078 | 0.66 | 0.988334 |
Target: 5'- gGCuCGcUCGGGCG-GUCCAUGGcGCgACg -3' miRNA: 3'- aCG-GC-AGUUCGCaCAGGUAUU-UGgUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 65553 | 0.66 | 0.988334 |
Target: 5'- aGCgCGUgcCAGGCG--UCCAUGAaguGCCGCa -3' miRNA: 3'- aCG-GCA--GUUCGCacAGGUAUU---UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 63651 | 0.66 | 0.988334 |
Target: 5'- aGCCGUCc-GCGUccCCGUucACCAUg -3' miRNA: 3'- aCGGCAGuuCGCAcaGGUAuuUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 103883 | 0.66 | 0.988334 |
Target: 5'- cGCCGcCGGGCGgcgcgCCAagccGGGCCACc -3' miRNA: 3'- aCGGCaGUUCGCaca--GGUa---UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 61137 | 0.66 | 0.988334 |
Target: 5'- gGCCGUCGAGagcaGcGUCCGc--GCCAg -3' miRNA: 3'- aCGGCAGUUCg---CaCAGGUauuUGGUg -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 86297 | 0.66 | 0.988334 |
Target: 5'- cGCCGgcgaCGAGCGgGaCCA--GGCCGCg -3' miRNA: 3'- aCGGCa---GUUCGCaCaGGUauUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 56482 | 0.66 | 0.988334 |
Target: 5'- cGCCGUCuu-CGcGUCCGUcuuCCACu -3' miRNA: 3'- aCGGCAGuucGCaCAGGUAuuuGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 54507 | 0.66 | 0.988334 |
Target: 5'- cGCCGUCAAGCuaaacgcgCuCAUGGugCGCu -3' miRNA: 3'- aCGGCAGUUCGcaca----G-GUAUUugGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 3193 | 0.66 | 0.988334 |
Target: 5'- cGCCG-CAGGCGUcggCCucgccGCCGCg -3' miRNA: 3'- aCGGCaGUUCGCAca-GGuauu-UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 8841 | 0.66 | 0.986739 |
Target: 5'- gGCCGUCucacAGCccgGUGgaCCcgAAGCCGCg -3' miRNA: 3'- aCGGCAGu---UCG---CACa-GGuaUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 22413 | 0.66 | 0.986739 |
Target: 5'- aGCUGgcgCAccGCGUGUgCGUGAGCCuCa -3' miRNA: 3'- aCGGCa--GUu-CGCACAgGUAUUUGGuG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 71133 | 0.66 | 0.986739 |
Target: 5'- cGCCGcccgCAccGCGUcgcgCCAUGGACCGCc -3' miRNA: 3'- aCGGCa---GUu-CGCAca--GGUAUUUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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