miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 91525 0.67 0.978393
Target:  5'- gGCCGUCGucgcgcuAGCGaaUG-CCGUGgcGGCCGCc -3'
miRNA:   3'- aCGGCAGU-------UCGC--ACaGGUAU--UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 90710 0.67 0.978634
Target:  5'- cGCCGUCGAGU---UCgAgcuGACCACg -3'
miRNA:   3'- aCGGCAGUUCGcacAGgUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 88539 0.69 0.943378
Target:  5'- cGCCuacGUCAAGC----CCAUGGGCCACg -3'
miRNA:   3'- aCGG---CAGUUCGcacaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 88457 0.69 0.947549
Target:  5'- cGCCGcgUGAGCGUGUgggcgggCCGU--GCCGCg -3'
miRNA:   3'- aCGGCa-GUUCGCACA-------GGUAuuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 87702 0.69 0.941941
Target:  5'- cGCCG-CAAGCaGUgcgagcuuaucgagGUCCAggUGGGCCGCg -3'
miRNA:   3'- aCGGCaGUUCG-CA--------------CAGGU--AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 87253 0.67 0.973421
Target:  5'- cGCCGUCGGccgagagguuucGCGcG-CCGUAgucGACCACg -3'
miRNA:   3'- aCGGCAGUU------------CGCaCaGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 86867 0.67 0.980937
Target:  5'- cGCCGcCGGGCGcGgcggCCuu-GGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCa---GGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 86297 0.66 0.988334
Target:  5'- cGCCGgcgaCGAGCGgGaCCA--GGCCGCg -3'
miRNA:   3'- aCGGCa---GUUCGCaCaGGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 85808 0.72 0.816732
Target:  5'- gGCCGUCGAGUacggGUCCA--GGCCAg -3'
miRNA:   3'- aCGGCAGUUCGca--CAGGUauUUGGUg -5'
23569 5' -50.9 NC_005261.1 + 85636 0.78 0.526979
Target:  5'- cGCCGUUGAGCaG-GUCCAUGAagcGCCGCc -3'
miRNA:   3'- aCGGCAGUUCG-CaCAGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 85148 0.7 0.910144
Target:  5'- gUGCCuUCcuGCG-GUCCGUGcGCCGCc -3'
miRNA:   3'- -ACGGcAGuuCGCaCAGGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 84967 0.72 0.851507
Target:  5'- aGgCGUCGGGCGcGUCCGcGAugCGCc -3'
miRNA:   3'- aCgGCAGUUCGCaCAGGUaUUugGUG- -5'
23569 5' -50.9 NC_005261.1 + 83244 0.67 0.969572
Target:  5'- gGCCG-CcGGCGUGgCCGUAAagaccuuugcgaguGCCGCc -3'
miRNA:   3'- aCGGCaGuUCGCACaGGUAUU--------------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 83017 0.67 0.980937
Target:  5'- cGCCGUCGccGGCGcccCCGggaGGGCCGCu -3'
miRNA:   3'- aCGGCAGU--UCGCacaGGUa--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 82533 0.67 0.980937
Target:  5'- gGCCGccCAAGCGg--CCGU-GGCCGCc -3'
miRNA:   3'- aCGGCa-GUUCGCacaGGUAuUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 80679 0.68 0.952365
Target:  5'- aGCCGggcgcgugCGAcGUGUGcCCGUGcGCCGCg -3'
miRNA:   3'- aCGGCa-------GUU-CGCACaGGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 80418 0.68 0.967342
Target:  5'- cGCCGagagCGAGCGgg-CCGUAAagcggaaguuACCGCg -3'
miRNA:   3'- aCGGCa---GUUCGCacaGGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 80176 0.71 0.890002
Target:  5'- gUGCCGuUCGAGCGUG-CCAgcucCUGCa -3'
miRNA:   3'- -ACGGC-AGUUCGCACaGGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 78971 0.66 0.98305
Target:  5'- cGCCGUgCGAcGCGUGgcgCCGgcgcCCGCu -3'
miRNA:   3'- aCGGCA-GUU-CGCACa--GGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 77075 0.66 0.988334
Target:  5'- gGCCGUCgAGGCGgcgCCGgugcacGGCCAUg -3'
miRNA:   3'- aCGGCAG-UUCGCacaGGUau----UUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.