miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 96251 0.66 0.73399
Target:  5'- gGGUGGUGCagcucccccucgaguACGaGgaCGACGCUGGCgCGg -3'
miRNA:   3'- -CCACCACG---------------UGC-Cg-GCUGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 50626 0.66 0.701243
Target:  5'- -uUGGUGCuccacgcggGCGGCggggUGGCGCCGGCg-- -3'
miRNA:   3'- ccACCACG---------UGCCG----GCUGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 34517 0.66 0.701243
Target:  5'- uGGUGG-GCACcuucGCCGugacggccCGCgAGCUCGc -3'
miRNA:   3'- -CCACCaCGUGc---CGGCu-------GCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 122145 1.1 0.000897
Target:  5'- uGGUGGUGCACGGCCGACGCCAGCUCGa -3'
miRNA:   3'- -CCACCACGUGCCGGCUGCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 95792 0.66 0.73018
Target:  5'- --cGGcGCGCugcuaGCCGGCGCCGGCg-- -3'
miRNA:   3'- ccaCCaCGUGc----CGGCUGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 83310 0.66 0.73018
Target:  5'- gGGUcGUGCAgcuCGGgCGGCGCCAcGC-CGc -3'
miRNA:   3'- -CCAcCACGU---GCCgGCUGCGGU-CGaGC- -5'
23570 5' -60.5 NC_005261.1 + 20147 0.66 0.73018
Target:  5'- -----aGCGCucaGGCCG-CGCCGGCUCu -3'
miRNA:   3'- ccaccaCGUG---CCGGCuGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 114335 0.66 0.720603
Target:  5'- aGGUGGacugGCucgaGCGGCgCGugGCCgcGGC-CGa -3'
miRNA:   3'- -CCACCa---CG----UGCCG-GCugCGG--UCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 48808 0.66 0.720603
Target:  5'- aGGccGUGCGCGGCguccgCGACGCCGuCgUCGg -3'
miRNA:   3'- -CCacCACGUGCCG-----GCUGCGGUcG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 59882 0.66 0.701243
Target:  5'- --gGGUGC-CGGCgGGCaGC-AGCUCGu -3'
miRNA:   3'- ccaCCACGuGCCGgCUG-CGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 3445 0.66 0.710954
Target:  5'- aGGcgGGcGCGCgGGCCGccGCGCCGcGCgUCGa -3'
miRNA:   3'- -CCa-CCaCGUG-CCGGC--UGCGGU-CG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 30236 0.66 0.720603
Target:  5'- cGUGGccccgcugGCGCGGUacuCGACGCgCGGCgCGg -3'
miRNA:   3'- cCACCa-------CGUGCCG---GCUGCG-GUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 114558 0.66 0.73018
Target:  5'- cGGcGGggaGCGGCCGcCGCCGGaUCGc -3'
miRNA:   3'- -CCaCCacgUGCCGGCuGCGGUCgAGC- -5'
23570 5' -60.5 NC_005261.1 + 98309 0.66 0.701243
Target:  5'- cGG-GG-GCGgGcGCCGcCGCCAGCggCGg -3'
miRNA:   3'- -CCaCCaCGUgC-CGGCuGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 64058 0.66 0.73018
Target:  5'- cGUGGUGCGCcaccGGCUGcCGCaCGGUggCGu -3'
miRNA:   3'- cCACCACGUG----CCGGCuGCG-GUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 82045 0.66 0.720603
Target:  5'- uGGUGcGUcaGCGCGGgccaCGuCGCCGGgUCGa -3'
miRNA:   3'- -CCAC-CA--CGUGCCg---GCuGCGGUCgAGC- -5'
23570 5' -60.5 NC_005261.1 + 14532 0.66 0.701243
Target:  5'- cGGcGGUgGCGCGGCCG-C-CCGGCg-- -3'
miRNA:   3'- -CCaCCA-CGUGCCGGCuGcGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 42935 0.66 0.701243
Target:  5'- aGUGG-GUGCGGauccacCCGACGCCgcgcacgcGGCUCu -3'
miRNA:   3'- cCACCaCGUGCC------GGCUGCGG--------UCGAGc -5'
23570 5' -60.5 NC_005261.1 + 1494 0.66 0.73018
Target:  5'- --aGGccaccGcCGCGGCCGgcagcucgucggGCGCCAGCUCc -3'
miRNA:   3'- ccaCCa----C-GUGCCGGC------------UGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 46933 0.66 0.73018
Target:  5'- aGGaUGGUGCucacGCGGCCcGCggGCCAGUcCGc -3'
miRNA:   3'- -CC-ACCACG----UGCCGGcUG--CGGUCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.