Results 1 - 20 of 441 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23571 | 5' | -54.3 | NC_005261.1 | + | 35552 | 0.66 | 0.946285 |
Target: 5'- cGGCcgCGGCGgacgcggcgcugggcGCCgCGgagGAGGUGCuGCg -3' miRNA: 3'- -CCGuaGUCGC---------------CGGgGUa--UUUCACG-CG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 86272 | 0.66 | 0.94448 |
Target: 5'- aGCAgcgCGGCGGCgUCGUc-GGUgGCGCc -3' miRNA: 3'- cCGUa--GUCGCCGgGGUAuuUCA-CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 83114 | 0.66 | 0.94448 |
Target: 5'- cGGCAguUgAGCGGCCC----GGGUGCcCg -3' miRNA: 3'- -CCGU--AgUCGCCGGGguauUUCACGcG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 78651 | 0.66 | 0.94448 |
Target: 5'- uGGCGgc-GCGGCaCCCGcUGcGGcGCGCg -3' miRNA: 3'- -CCGUaguCGCCG-GGGU-AUuUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 18749 | 0.66 | 0.94448 |
Target: 5'- cGGCGcCGGCGuCCCCA--AGG-GCGUc -3' miRNA: 3'- -CCGUaGUCGCcGGGGUauUUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 77445 | 0.66 | 0.94448 |
Target: 5'- uGGuCGUCAGCcaGGCCCgGg-----GCGCg -3' miRNA: 3'- -CC-GUAGUCG--CCGGGgUauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 122456 | 0.66 | 0.94448 |
Target: 5'- cGGCGcccgcCAGCGGCCUUGUGuaucgcggcGAGgcggucggccUGCGCg -3' miRNA: 3'- -CCGUa----GUCGCCGGGGUAU---------UUC----------ACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 110031 | 0.66 | 0.94448 |
Target: 5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3' miRNA: 3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 79310 | 0.66 | 0.94448 |
Target: 5'- cGGCGUgcGCGGgCgCGcu-GGUGCGCg -3' miRNA: 3'- -CCGUAguCGCCgGgGUauuUCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 134783 | 0.66 | 0.94448 |
Target: 5'- cGGCG-CGGCGGCCC--------GCGCg -3' miRNA: 3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 120075 | 0.66 | 0.94448 |
Target: 5'- cGCAaCGGCuaCCCCGUGGAGgcucggcacGCGCg -3' miRNA: 3'- cCGUaGUCGccGGGGUAUUUCa--------CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 81420 | 0.66 | 0.94448 |
Target: 5'- cGGCAcCAggaacaccGUGGCCCgCugccgGAAGUGgGCa -3' miRNA: 3'- -CCGUaGU--------CGCCGGG-Gua---UUUCACgCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 30266 | 0.66 | 0.94448 |
Target: 5'- cGGCG-CGGCGGCCC--------GCGCg -3' miRNA: 3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 65484 | 0.66 | 0.94448 |
Target: 5'- gGGCAU--GCGGCCcgCCAUGcGGgccgcccGCGCg -3' miRNA: 3'- -CCGUAguCGCCGG--GGUAUuUCa------CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 47097 | 0.66 | 0.94448 |
Target: 5'- cGGCA-CGGCugaGGCCUCGgccgcgGCGCg -3' miRNA: 3'- -CCGUaGUCG---CCGGGGUauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 136877 | 0.66 | 0.94448 |
Target: 5'- uGGCGUaGGCGcGgCCgAUGAAGUGUacugGCg -3' miRNA: 3'- -CCGUAgUCGC-CgGGgUAUUUCACG----CG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 41161 | 0.66 | 0.94448 |
Target: 5'- aGGCuUCGuccacGCGGCCCgGguccaggccgGgcGUGCGCa -3' miRNA: 3'- -CCGuAGU-----CGCCGGGgUa---------UuuCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 121633 | 0.66 | 0.94448 |
Target: 5'- cGC-UCGGCGGCCgCCGcc-GGcgaGCGCg -3' miRNA: 3'- cCGuAGUCGCCGG-GGUauuUCa--CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 20550 | 0.66 | 0.94448 |
Target: 5'- cGGCcUCGccGCGGgCCCGgccGG-GCGCg -3' miRNA: 3'- -CCGuAGU--CGCCgGGGUauuUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 55784 | 0.66 | 0.94448 |
Target: 5'- cGGCAaCGGCGGCgcggggCCGgccGGGG-GCGCg -3' miRNA: 3'- -CCGUaGUCGCCGg-----GGUa--UUUCaCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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