miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 35552 0.66 0.946285
Target:  5'- cGGCcgCGGCGgacgcggcgcugggcGCCgCGgagGAGGUGCuGCg -3'
miRNA:   3'- -CCGuaGUCGC---------------CGGgGUa--UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 86272 0.66 0.94448
Target:  5'- aGCAgcgCGGCGGCgUCGUc-GGUgGCGCc -3'
miRNA:   3'- cCGUa--GUCGCCGgGGUAuuUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 83114 0.66 0.94448
Target:  5'- cGGCAguUgAGCGGCCC----GGGUGCcCg -3'
miRNA:   3'- -CCGU--AgUCGCCGGGguauUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 78651 0.66 0.94448
Target:  5'- uGGCGgc-GCGGCaCCCGcUGcGGcGCGCg -3'
miRNA:   3'- -CCGUaguCGCCG-GGGU-AUuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 18749 0.66 0.94448
Target:  5'- cGGCGcCGGCGuCCCCA--AGG-GCGUc -3'
miRNA:   3'- -CCGUaGUCGCcGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 77445 0.66 0.94448
Target:  5'- uGGuCGUCAGCcaGGCCCgGg-----GCGCg -3'
miRNA:   3'- -CC-GUAGUCG--CCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122456 0.66 0.94448
Target:  5'- cGGCGcccgcCAGCGGCCUUGUGuaucgcggcGAGgcggucggccUGCGCg -3'
miRNA:   3'- -CCGUa----GUCGCCGGGGUAU---------UUC----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 110031 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 79310 0.66 0.94448
Target:  5'- cGGCGUgcGCGGgCgCGcu-GGUGCGCg -3'
miRNA:   3'- -CCGUAguCGCCgGgGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 134783 0.66 0.94448
Target:  5'- cGGCG-CGGCGGCCC--------GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 120075 0.66 0.94448
Target:  5'- cGCAaCGGCuaCCCCGUGGAGgcucggcacGCGCg -3'
miRNA:   3'- cCGUaGUCGccGGGGUAUUUCa--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 81420 0.66 0.94448
Target:  5'- cGGCAcCAggaacaccGUGGCCCgCugccgGAAGUGgGCa -3'
miRNA:   3'- -CCGUaGU--------CGCCGGG-Gua---UUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 30266 0.66 0.94448
Target:  5'- cGGCG-CGGCGGCCC--------GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65484 0.66 0.94448
Target:  5'- gGGCAU--GCGGCCcgCCAUGcGGgccgcccGCGCg -3'
miRNA:   3'- -CCGUAguCGCCGG--GGUAUuUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 47097 0.66 0.94448
Target:  5'- cGGCA-CGGCugaGGCCUCGgccgcgGCGCg -3'
miRNA:   3'- -CCGUaGUCG---CCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 136877 0.66 0.94448
Target:  5'- uGGCGUaGGCGcGgCCgAUGAAGUGUacugGCg -3'
miRNA:   3'- -CCGUAgUCGC-CgGGgUAUUUCACG----CG- -5'
23571 5' -54.3 NC_005261.1 + 41161 0.66 0.94448
Target:  5'- aGGCuUCGuccacGCGGCCCgGguccaggccgGgcGUGCGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCGGGgUa---------UuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 121633 0.66 0.94448
Target:  5'- cGC-UCGGCGGCCgCCGcc-GGcgaGCGCg -3'
miRNA:   3'- cCGuAGUCGCCGG-GGUauuUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 20550 0.66 0.94448
Target:  5'- cGGCcUCGccGCGGgCCCGgccGG-GCGCg -3'
miRNA:   3'- -CCGuAGU--CGCCgGGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55784 0.66 0.94448
Target:  5'- cGGCAaCGGCGGCgcggggCCGgccGGGG-GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGg-----GGUa--UUUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.