miRNA display CGI


Results 21 - 40 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 55784 0.66 0.94448
Target:  5'- cGGCAaCGGCGGCgcggggCCGgccGGGG-GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGg-----GGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 28684 0.66 0.943102
Target:  5'- gGGCcgCGGCgguuguggcgagggGGCCCgCGgcGGGcGCGCa -3'
miRNA:   3'- -CCGuaGUCG--------------CCGGG-GUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 82009 0.66 0.941701
Target:  5'- -cCGUCgaagAGCGGCCCguUGAcgaggucgaagaacuGGUGCGUc -3'
miRNA:   3'- ccGUAG----UCGCCGGGguAUU---------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20487 0.66 0.939799
Target:  5'- cGGCGUugggggCGGCGGCgCCAgc----GCGCg -3'
miRNA:   3'- -CCGUA------GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 54544 0.66 0.939799
Target:  5'- cGGCGccgccUCGGCGGCgcgcugcgcgCCCA---GGcGCGCg -3'
miRNA:   3'- -CCGU-----AGUCGCCG----------GGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 12249 0.66 0.939799
Target:  5'- aGGCcauguuGCGGcCCCCGUcgccgagcGAAGUGCuGCc -3'
miRNA:   3'- -CCGuagu--CGCC-GGGGUA--------UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 20231 0.66 0.939799
Target:  5'- aGCGUcCAGCGccGCCgCCGUcaggccgguGUGCGCg -3'
miRNA:   3'- cCGUA-GUCGC--CGG-GGUAuuu------CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 7466 0.66 0.939799
Target:  5'- gGGCGcCAGCuGCUCCGUGGuuaccAGcaGCGCg -3'
miRNA:   3'- -CCGUaGUCGcCGGGGUAUU-----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 16410 0.66 0.939799
Target:  5'- cGCcgCGGCGGCCCgCAgagcccAGccacGCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGG-GUauu---UCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 115541 0.66 0.939799
Target:  5'- aGCAUCGGCGGCUggugcagguCCGUGug--GCaGCa -3'
miRNA:   3'- cCGUAGUCGCCGG---------GGUAUuucaCG-CG- -5'
23571 5' -54.3 NC_005261.1 + 102795 0.66 0.939799
Target:  5'- cGGCcgCGagcGCGGCgCCCAgccgccGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCG-GGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 102288 0.66 0.939799
Target:  5'- cGCGcCAGCGGCCgCGggucguAGccGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGgGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 88180 0.66 0.939799
Target:  5'- gGGCGacgcCGGCGGCgCCGgcGAGgcgggccGCGCc -3'
miRNA:   3'- -CCGUa---GUCGCCGgGGUauUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36583 0.66 0.939799
Target:  5'- gGGCccgCcGCGGCCaCCGgggGGGGgcaGCGCu -3'
miRNA:   3'- -CCGua-GuCGCCGG-GGUa--UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 85583 0.66 0.939317
Target:  5'- cGCGaCcGCGGCCuCCGcGAgcgucacggucacGGUGCGCg -3'
miRNA:   3'- cCGUaGuCGCCGG-GGUaUU-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 68281 0.66 0.938833
Target:  5'- cGCG-CGGCggGGCCCCGgccgcggGCGCg -3'
miRNA:   3'- cCGUaGUCG--CCGGGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 68830 0.66 0.936871
Target:  5'- gGGCcgUGGCGGCCCCcccgucc-CGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuucacGCG- -5'
23571 5' -54.3 NC_005261.1 + 57638 0.66 0.936871
Target:  5'- uGGC-UCAGCagccgcccgagcacGCCCCcgAGAcUGCGCg -3'
miRNA:   3'- -CCGuAGUCGc-------------CGGGGuaUUUcACGCG- -5'
23571 5' -54.3 NC_005261.1 + 109134 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 86743 0.66 0.93487
Target:  5'- aGCAUCAggggcGCGGCgCCgGUGAucaGCGCc -3'
miRNA:   3'- cCGUAGU-----CGCCG-GGgUAUUucaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.