miRNA display CGI


Results 21 - 40 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 31936 0.66 0.93487
Target:  5'- gGGCucugCcGCGGCgCCAac--GUGCGCu -3'
miRNA:   3'- -CCGua--GuCGCCGgGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 4617 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 36583 0.66 0.939799
Target:  5'- gGGCccgCcGCGGCCaCCGgggGGGGgcaGCGCu -3'
miRNA:   3'- -CCGua-GuCGCCGG-GGUa--UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 30266 0.66 0.94448
Target:  5'- cGGCG-CGGCGGCCC--------GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 33514 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 109823 0.66 0.929692
Target:  5'- cGCcgCGGCGGCCgCCGaaucugGCGUg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 103956 0.66 0.93487
Target:  5'- cGGCGcgaccgCGGCGGCCgCCAcacgGAA--GCGCu -3'
miRNA:   3'- -CCGUa-----GUCGCCGG-GGUa---UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 41161 0.66 0.94448
Target:  5'- aGGCuUCGuccacGCGGCCCgGguccaggccgGgcGUGCGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCGGGgUa---------UuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 14343 0.66 0.93487
Target:  5'- cGGCAgcagCAGCGGCagcagCCGcggccGGGgcgGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGg----GGUau---UUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121633 0.66 0.94448
Target:  5'- cGC-UCGGCGGCCgCCGcc-GGcgaGCGCg -3'
miRNA:   3'- cCGuAGUCGCCGG-GGUauuUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 45630 0.66 0.93487
Target:  5'- cGGCG-CGGCGGgCCCGcgccgGAgcAGUGCccaGCg -3'
miRNA:   3'- -CCGUaGUCGCCgGGGUa----UU--UCACG---CG- -5'
23571 5' -54.3 NC_005261.1 + 15269 0.66 0.93487
Target:  5'- cGCccCGGCGGCgCCGccGGG-GCGCg -3'
miRNA:   3'- cCGuaGUCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 68281 0.66 0.938833
Target:  5'- cGCG-CGGCggGGCCCCGgccgcggGCGCg -3'
miRNA:   3'- cCGUaGUCG--CCGGGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 115541 0.66 0.939799
Target:  5'- aGCAUCGGCGGCUggugcagguCCGUGug--GCaGCa -3'
miRNA:   3'- cCGUAGUCGCCGG---------GGUAUuucaCG-CG- -5'
23571 5' -54.3 NC_005261.1 + 82009 0.66 0.941701
Target:  5'- -cCGUCgaagAGCGGCCCguUGAcgaggucgaagaacuGGUGCGUc -3'
miRNA:   3'- ccGUAG----UCGCCGGGguAUU---------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 120075 0.66 0.94448
Target:  5'- cGCAaCGGCuaCCCCGUGGAGgcucggcacGCGCg -3'
miRNA:   3'- cCGUaGUCGccGGGGUAUUUCa--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 18679 0.66 0.929692
Target:  5'- gGGCga-AGgGGCCCCAggcuGUugcgGCGCa -3'
miRNA:   3'- -CCGuagUCgCCGGGGUauuuCA----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 11830 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106545 0.66 0.929692
Target:  5'- cGGC---GGCGGCCgCGUccGGgccgGCGCg -3'
miRNA:   3'- -CCGuagUCGCCGGgGUAuuUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 94260 0.66 0.929692
Target:  5'- cGGCGcagGGCGGCgCCGcGAGGcucuugGCGCa -3'
miRNA:   3'- -CCGUag-UCGCCGgGGUaUUUCa-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.