Results 1 - 20 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23572 | 5' | -56.1 | NC_005261.1 | + | 34442 | 0.66 | 0.883497 |
Target: 5'- gCGCAcaccgaagacGGCCucgcGGCCUGGguggcgcugcuGCACGAg -3' miRNA: 3'- aGCGU----------CCGG----UCGGACCaauu-------CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 126446 | 0.66 | 0.880647 |
Target: 5'- gCGCaaAGGCCAGCCgcgcc-AGCGCGc -3' miRNA: 3'- aGCG--UCCGGUCGGaccaauUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 110962 | 0.66 | 0.880647 |
Target: 5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3' miRNA: 3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 16134 | 0.66 | 0.880647 |
Target: 5'- uUCGUGGGCUAcGCCugcUGGcUGcGCGCGGg -3' miRNA: 3'- -AGCGUCCGGU-CGG---ACCaAUuCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 71202 | 0.66 | 0.880647 |
Target: 5'- gCGC-GGCCAGCUgcgcgaUGGUgc-GCGCGc -3' miRNA: 3'- aGCGuCCGGUCGG------ACCAauuCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 54945 | 0.66 | 0.880647 |
Target: 5'- gCGCA-GCCGuGCCUGGUgu-GCuuCGAg -3' miRNA: 3'- aGCGUcCGGU-CGGACCAauuCGu-GCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 98232 | 0.66 | 0.880647 |
Target: 5'- -gGCGGGCaucgauuuccgCGGCCcGGUgcGGCGCGu -3' miRNA: 3'- agCGUCCG-----------GUCGGaCCAauUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 6445 | 0.66 | 0.880647 |
Target: 5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3' miRNA: 3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 115413 | 0.66 | 0.880647 |
Target: 5'- cCGCGGGCggCAGCCgGGgccgcGGCcCGAg -3' miRNA: 3'- aGCGUCCG--GUCGGaCCaau--UCGuGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 60080 | 0.66 | 0.880647 |
Target: 5'- cCGCGGGCU-GCgUGGgcagcAGCACGc -3' miRNA: 3'- aGCGUCCGGuCGgACCaau--UCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 17060 | 0.66 | 0.880647 |
Target: 5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3' miRNA: 3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 122342 | 0.66 | 0.880647 |
Target: 5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3' miRNA: 3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 36558 | 0.66 | 0.880647 |
Target: 5'- uUCGCcGGCuCGGCCUacgaGGcgcagaugcUGAGCACGGu -3' miRNA: 3'- -AGCGuCCG-GUCGGA----CCa--------AUUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 75486 | 0.66 | 0.879929 |
Target: 5'- gCGCGGGCCgcuacgagcgcggGGCgCUGG--AGGCGCa- -3' miRNA: 3'- aGCGUCCGG-------------UCG-GACCaaUUCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 41877 | 0.66 | 0.873364 |
Target: 5'- gCGcCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3' miRNA: 3'- aGC-GUCCGGUCGGaCCa-------AUuCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 6029 | 0.66 | 0.873364 |
Target: 5'- gCGCGGGCgGGCCcGGacccAAGCaauGCGGg -3' miRNA: 3'- aGCGUCCGgUCGGaCCaa--UUCG---UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 2785 | 0.66 | 0.873364 |
Target: 5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3' miRNA: 3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 25753 | 0.66 | 0.873364 |
Target: 5'- gUCGCGGGCgAGCaUGccgcgcauGUUuAGCACGGc -3' miRNA: 3'- -AGCGUCCGgUCGgAC--------CAAuUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 77308 | 0.66 | 0.873364 |
Target: 5'- cCGCGGGUCgccgccguggagGGCC-GGUaGAGCAgGAa -3' miRNA: 3'- aGCGUCCGG------------UCGGaCCAaUUCGUgCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 99322 | 0.66 | 0.873364 |
Target: 5'- gCGCGGGCCGcgcgcGCC-GGagAAGgACGAc -3' miRNA: 3'- aGCGUCCGGU-----CGGaCCaaUUCgUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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