miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 34442 0.66 0.883497
Target:  5'- gCGCAcaccgaagacGGCCucgcGGCCUGGguggcgcugcuGCACGAg -3'
miRNA:   3'- aGCGU----------CCGG----UCGGACCaauu-------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 110962 0.66 0.880647
Target:  5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3'
miRNA:   3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 16134 0.66 0.880647
Target:  5'- uUCGUGGGCUAcGCCugcUGGcUGcGCGCGGg -3'
miRNA:   3'- -AGCGUCCGGU-CGG---ACCaAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 126446 0.66 0.880647
Target:  5'- gCGCaaAGGCCAGCCgcgcc-AGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUCGGaccaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 71202 0.66 0.880647
Target:  5'- gCGC-GGCCAGCUgcgcgaUGGUgc-GCGCGc -3'
miRNA:   3'- aGCGuCCGGUCGG------ACCAauuCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 54945 0.66 0.880647
Target:  5'- gCGCA-GCCGuGCCUGGUgu-GCuuCGAg -3'
miRNA:   3'- aGCGUcCGGU-CGGACCAauuCGu-GCU- -5'
23572 5' -56.1 NC_005261.1 + 98232 0.66 0.880647
Target:  5'- -gGCGGGCaucgauuuccgCGGCCcGGUgcGGCGCGu -3'
miRNA:   3'- agCGUCCG-----------GUCGGaCCAauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 6445 0.66 0.880647
Target:  5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3'
miRNA:   3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 115413 0.66 0.880647
Target:  5'- cCGCGGGCggCAGCCgGGgccgcGGCcCGAg -3'
miRNA:   3'- aGCGUCCG--GUCGGaCCaau--UCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 60080 0.66 0.880647
Target:  5'- cCGCGGGCU-GCgUGGgcagcAGCACGc -3'
miRNA:   3'- aGCGUCCGGuCGgACCaau--UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 17060 0.66 0.880647
Target:  5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3'
miRNA:   3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5'
23572 5' -56.1 NC_005261.1 + 36558 0.66 0.880647
Target:  5'- uUCGCcGGCuCGGCCUacgaGGcgcagaugcUGAGCACGGu -3'
miRNA:   3'- -AGCGuCCG-GUCGGA----CCa--------AUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 122342 0.66 0.880647
Target:  5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3'
miRNA:   3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 75486 0.66 0.879929
Target:  5'- gCGCGGGCCgcuacgagcgcggGGCgCUGG--AGGCGCa- -3'
miRNA:   3'- aGCGUCCGG-------------UCG-GACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 99322 0.66 0.873364
Target:  5'- gCGCGGGCCGcgcgcGCC-GGagAAGgACGAc -3'
miRNA:   3'- aGCGUCCGGU-----CGGaCCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 77308 0.66 0.873364
Target:  5'- cCGCGGGUCgccgccguggagGGCC-GGUaGAGCAgGAa -3'
miRNA:   3'- aGCGUCCGG------------UCGGaCCAaUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 25753 0.66 0.873364
Target:  5'- gUCGCGGGCgAGCaUGccgcgcauGUUuAGCACGGc -3'
miRNA:   3'- -AGCGUCCGgUCGgAC--------CAAuUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 2785 0.66 0.873364
Target:  5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3'
miRNA:   3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 6029 0.66 0.873364
Target:  5'- gCGCGGGCgGGCCcGGacccAAGCaauGCGGg -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaa--UUCG---UGCU- -5'
23572 5' -56.1 NC_005261.1 + 41877 0.66 0.873364
Target:  5'- gCGcCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGC-GUCCGGUCGGaCCa-------AUuCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.