Results 21 - 40 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 5' | -56.1 | NC_005261.1 | + | 98676 | 0.66 | 0.865857 |
Target: 5'- -gGCGGGCUccGCCgGGgccggAGGCGCGGc -3' miRNA: 3'- agCGUCCGGu-CGGaCCaa---UUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 84856 | 0.66 | 0.865857 |
Target: 5'- cCGCGGGCC-GCgUGGccaUGAccgagcGCACGAg -3' miRNA: 3'- aGCGUCCGGuCGgACCa--AUU------CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 3596 | 0.66 | 0.873364 |
Target: 5'- gUCGCGGGCCGcGCCaagcagcucagcUGcccgGAGCACGc -3' miRNA: 3'- -AGCGUCCGGU-CGG------------ACcaa-UUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 6445 | 0.66 | 0.880647 |
Target: 5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3' miRNA: 3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 19153 | 0.66 | 0.8502 |
Target: 5'- gCGCAcGGCCAGCC-GGcgGAucaCGCGAa -3' miRNA: 3'- aGCGU-CCGGUCGGaCCaaUUc--GUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 53718 | 0.66 | 0.858916 |
Target: 5'- cCGC-GGCCAGCUgcggcgcgcccgcacGGgcGAGCACGu -3' miRNA: 3'- aGCGuCCGGUCGGa--------------CCaaUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 68514 | 0.66 | 0.865857 |
Target: 5'- aUGCAGGCguGCCUGcc--GGCGCc- -3' miRNA: 3'- aGCGUCCGguCGGACcaauUCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 17060 | 0.66 | 0.880647 |
Target: 5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3' miRNA: 3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 97550 | 0.66 | 0.865095 |
Target: 5'- -gGCGGuGCCGGCCcguccgcccggGGUUGgcucgguGGCGCGGg -3' miRNA: 3'- agCGUC-CGGUCGGa----------CCAAU-------UCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 60080 | 0.66 | 0.880647 |
Target: 5'- cCGCGGGCU-GCgUGGgcagcAGCACGc -3' miRNA: 3'- aGCGUCCGGuCGgACCaau--UCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 3921 | 0.66 | 0.865857 |
Target: 5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3' miRNA: 3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 96959 | 0.66 | 0.865857 |
Target: 5'- -gGCGGGgCAGCCgcc--GGGCGCGAu -3' miRNA: 3'- agCGUCCgGUCGGaccaaUUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 13339 | 0.66 | 0.873364 |
Target: 5'- cUCGCGcGGCCAGCggucggcggaggCUGGgc-GGCACc- -3' miRNA: 3'- -AGCGU-CCGGUCG------------GACCaauUCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 138126 | 0.66 | 0.873364 |
Target: 5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3' miRNA: 3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 71202 | 0.66 | 0.880647 |
Target: 5'- gCGC-GGCCAGCUgcgcgaUGGUgc-GCGCGc -3' miRNA: 3'- aGCGuCCGGUCGG------ACCAauuCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 122342 | 0.66 | 0.880647 |
Target: 5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3' miRNA: 3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 19030 | 0.67 | 0.832037 |
Target: 5'- gUCGCGGGgCAGCCggagagccgccaGGcagGGGUACGGg -3' miRNA: 3'- -AGCGUCCgGUCGGa-----------CCaa-UUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 126072 | 0.67 | 0.842062 |
Target: 5'- cCGCccGCCGGCCUcGgcGGGCGCGc -3' miRNA: 3'- aGCGucCGGUCGGAcCaaUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 136865 | 0.66 | 0.8502 |
Target: 5'- -gGCAGGgCAGgaUGGcgUAGGCGCGGc -3' miRNA: 3'- agCGUCCgGUCggACCa-AUUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 29797 | 0.66 | 0.858134 |
Target: 5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3' miRNA: 3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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