miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 56535 0.66 0.8502
Target:  5'- gUCGCGcGGuUCAGCCggcUGG-UGGGCACGu -3'
miRNA:   3'- -AGCGU-CC-GGUCGG---ACCaAUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 68514 0.66 0.865857
Target:  5'- aUGCAGGCguGCCUGcc--GGCGCc- -3'
miRNA:   3'- aGCGUCCGguCGGACcaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 17060 0.66 0.880647
Target:  5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3'
miRNA:   3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5'
23572 5' -56.1 NC_005261.1 + 115825 0.66 0.851003
Target:  5'- aCGCGGugcGCCAGCUUGGgcgcguuggcccGCGCGGc -3'
miRNA:   3'- aGCGUC---CGGUCGGACCaauu--------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 60080 0.66 0.880647
Target:  5'- cCGCGGGCU-GCgUGGgcagcAGCACGc -3'
miRNA:   3'- aGCGUCCGGuCGgACCaau--UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 136637 0.68 0.780035
Target:  5'- -gGCGGGaaGGCCUGGUccgccugGAGCuCGAu -3'
miRNA:   3'- agCGUCCggUCGGACCAa------UUCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 122342 0.66 0.880647
Target:  5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3'
miRNA:   3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 57673 0.68 0.789379
Target:  5'- gCGCgAGcGCCAGCC-GGcgGGGCACa- -3'
miRNA:   3'- aGCG-UC-CGGUCGGaCCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 49043 0.67 0.798576
Target:  5'- gCGCAGG-CAGCCgcc--GAGCACGGc -3'
miRNA:   3'- aGCGUCCgGUCGGaccaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 86429 0.67 0.807619
Target:  5'- cCGCAcGCCAucGCCaggUGGUccAGCGCGAa -3'
miRNA:   3'- aGCGUcCGGU--CGG---ACCAauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 4571 0.67 0.816497
Target:  5'- cCGCGGGCgGGUCcGGcgGGGCGCc- -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 19030 0.67 0.832037
Target:  5'- gUCGCGGGgCAGCCggagagccgccaGGcagGGGUACGGg -3'
miRNA:   3'- -AGCGUCCgGUCGGa-----------CCaa-UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 126072 0.67 0.842062
Target:  5'- cCGCccGCCGGCCUcGgcGGGCGCGc -3'
miRNA:   3'- aGCGucCGGUCGGAcCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 10478 0.66 0.858134
Target:  5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3'
miRNA:   3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 97550 0.66 0.865095
Target:  5'- -gGCGGuGCCGGCCcguccgcccggGGUUGgcucgguGGCGCGGg -3'
miRNA:   3'- agCGUC-CGGUCGGa----------CCAAU-------UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 98676 0.66 0.865857
Target:  5'- -gGCGGGCUccGCCgGGgccggAGGCGCGGc -3'
miRNA:   3'- agCGUCCGGu-CGGaCCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 84856 0.66 0.865857
Target:  5'- cCGCGGGCC-GCgUGGccaUGAccgagcGCACGAg -3'
miRNA:   3'- aGCGUCCGGuCGgACCa--AUU------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 13339 0.66 0.873364
Target:  5'- cUCGCGcGGCCAGCggucggcggaggCUGGgc-GGCACc- -3'
miRNA:   3'- -AGCGU-CCGGUCG------------GACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 138126 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 71202 0.66 0.880647
Target:  5'- gCGC-GGCCAGCUgcgcgaUGGUgc-GCGCGc -3'
miRNA:   3'- aGCGuCCGGUCGG------ACCAauuCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.