Results 61 - 80 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23573 | 5' | -54.1 | NC_005261.1 | + | 110060 | 0.66 | 0.939317 |
Target: 5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3' miRNA: 3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 36569 | 0.67 | 0.906495 |
Target: 5'- gGCCuACGAGGCGCaGAugcugagcacGGUGCGGc -3' miRNA: 3'- gCGGuUGUUCUGCGcCUu---------CCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 62689 | 0.67 | 0.900079 |
Target: 5'- gGCCGGCAGGACGCGcaGccGcUGCAGc -3' miRNA: 3'- gCGGUUGUUCUGCGC--CuuCcACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 33176 | 0.67 | 0.900079 |
Target: 5'- uGCCGGgGAGGgcUGgGGAGGG-GCGGGg -3' miRNA: 3'- gCGGUUgUUCU--GCgCCUUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 65803 | 0.67 | 0.899424 |
Target: 5'- cCGCCGgggGCAAG-CGCGGcgagcgcAAGG-GCGGGg -3' miRNA: 3'- -GCGGU---UGUUCuGCGCC-------UUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 115590 | 0.67 | 0.899424 |
Target: 5'- cCGCCAGCGcgucuagGGACG-GGAcGGgGCGGGa -3' miRNA: 3'- -GCGGUUGU-------UCUGCgCCUuCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 35507 | 0.67 | 0.906495 |
Target: 5'- aCGCCcuGGCGgcGGGCGCGGAcgcgGCGGAg -3' miRNA: 3'- -GCGG--UUGU--UCUGCGCCUuccaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 127069 | 0.67 | 0.910227 |
Target: 5'- gGCCGcgGCGAGAuaCGgGGAGGGgagggggagagcgGCGGAg -3' miRNA: 3'- gCGGU--UGUUCU--GCgCCUUCCa------------CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 20573 | 0.67 | 0.912666 |
Target: 5'- gGCgCGGCGGGGCGCuuagcgGGggGGcGCGGc -3' miRNA: 3'- gCG-GUUGUUCUGCG------CCuuCCaCGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 104156 | 0.67 | 0.924266 |
Target: 5'- aGCCAGCGgcGGAUGCaGGccaggcagaAGGcGUGCAGGc -3' miRNA: 3'- gCGGUUGU--UCUGCG-CC---------UUC-CACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 29855 | 0.67 | 0.924266 |
Target: 5'- gCGCgGGCGcGGACGCGGGcaGGGaUGCGc- -3' miRNA: 3'- -GCGgUUGU-UCUGCGCCU--UCC-ACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 35969 | 0.67 | 0.924266 |
Target: 5'- gGCCGACcGGGCGCuGGAGGcgagcgcGCAGc -3' miRNA: 3'- gCGGUUGuUCUGCGcCUUCCa------CGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 59438 | 0.67 | 0.923709 |
Target: 5'- aGCCGugAGagggagccccugcGGCGgGGGAGGggGCGGGg -3' miRNA: 3'- gCGGUugUU-------------CUGCgCCUUCCa-CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 32381 | 0.67 | 0.91859 |
Target: 5'- uCGCCGACcgggcGGACGCGGAca--GCGGGc -3' miRNA: 3'- -GCGGUUGu----UCUGCGCCUuccaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 127490 | 0.67 | 0.91859 |
Target: 5'- gGCCGA--GGAC-CGGGAGGaggcgGCGGAg -3' miRNA: 3'- gCGGUUguUCUGcGCCUUCCa----CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 117611 | 0.67 | 0.91859 |
Target: 5'- gGCCGGCAgucccGGAUGCGGGccAGGgGCGc- -3' miRNA: 3'- gCGGUUGU-----UCUGCGCCU--UCCaCGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 67545 | 0.67 | 0.906495 |
Target: 5'- gGCCGcGCuGGACGCcuggcuGGAGGUGCGGc -3' miRNA: 3'- gCGGU-UGuUCUGCGc-----CUUCCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 55161 | 0.67 | 0.912666 |
Target: 5'- gCGCCGGCc-GcCGCGGggGcGcGCAGGg -3' miRNA: 3'- -GCGGUUGuuCuGCGCCuuC-CaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 30756 | 0.67 | 0.912666 |
Target: 5'- cCGCUGAUcgcguGGGCGCGGGAcugcGGUGcCGGGg -3' miRNA: 3'- -GCGGUUGu----UCUGCGCCUU----CCAC-GUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 37290 | 0.67 | 0.924266 |
Target: 5'- gCGCCGu--GGACGCGGGccugcagcGGcUGCAGGc -3' miRNA: 3'- -GCGGUuguUCUGCGCCUu-------CC-ACGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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