miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 110060 0.66 0.939317
Target:  5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3'
miRNA:   3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 36569 0.67 0.906495
Target:  5'- gGCCuACGAGGCGCaGAugcugagcacGGUGCGGc -3'
miRNA:   3'- gCGGuUGUUCUGCGcCUu---------CCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 62689 0.67 0.900079
Target:  5'- gGCCGGCAGGACGCGcaGccGcUGCAGc -3'
miRNA:   3'- gCGGUUGUUCUGCGC--CuuCcACGUCu -5'
23573 5' -54.1 NC_005261.1 + 33176 0.67 0.900079
Target:  5'- uGCCGGgGAGGgcUGgGGAGGG-GCGGGg -3'
miRNA:   3'- gCGGUUgUUCU--GCgCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 65803 0.67 0.899424
Target:  5'- cCGCCGgggGCAAG-CGCGGcgagcgcAAGG-GCGGGg -3'
miRNA:   3'- -GCGGU---UGUUCuGCGCC-------UUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 115590 0.67 0.899424
Target:  5'- cCGCCAGCGcgucuagGGACG-GGAcGGgGCGGGa -3'
miRNA:   3'- -GCGGUUGU-------UCUGCgCCUuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35507 0.67 0.906495
Target:  5'- aCGCCcuGGCGgcGGGCGCGGAcgcgGCGGAg -3'
miRNA:   3'- -GCGG--UUGU--UCUGCGCCUuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 127069 0.67 0.910227
Target:  5'- gGCCGcgGCGAGAuaCGgGGAGGGgagggggagagcgGCGGAg -3'
miRNA:   3'- gCGGU--UGUUCU--GCgCCUUCCa------------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 20573 0.67 0.912666
Target:  5'- gGCgCGGCGGGGCGCuuagcgGGggGGcGCGGc -3'
miRNA:   3'- gCG-GUUGUUCUGCG------CCuuCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 104156 0.67 0.924266
Target:  5'- aGCCAGCGgcGGAUGCaGGccaggcagaAGGcGUGCAGGc -3'
miRNA:   3'- gCGGUUGU--UCUGCG-CC---------UUC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 29855 0.67 0.924266
Target:  5'- gCGCgGGCGcGGACGCGGGcaGGGaUGCGc- -3'
miRNA:   3'- -GCGgUUGU-UCUGCGCCU--UCC-ACGUcu -5'
23573 5' -54.1 NC_005261.1 + 35969 0.67 0.924266
Target:  5'- gGCCGACcGGGCGCuGGAGGcgagcgcGCAGc -3'
miRNA:   3'- gCGGUUGuUCUGCGcCUUCCa------CGUCu -5'
23573 5' -54.1 NC_005261.1 + 59438 0.67 0.923709
Target:  5'- aGCCGugAGagggagccccugcGGCGgGGGAGGggGCGGGg -3'
miRNA:   3'- gCGGUugUU-------------CUGCgCCUUCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 32381 0.67 0.91859
Target:  5'- uCGCCGACcgggcGGACGCGGAca--GCGGGc -3'
miRNA:   3'- -GCGGUUGu----UCUGCGCCUuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 127490 0.67 0.91859
Target:  5'- gGCCGA--GGAC-CGGGAGGaggcgGCGGAg -3'
miRNA:   3'- gCGGUUguUCUGcGCCUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 117611 0.67 0.91859
Target:  5'- gGCCGGCAgucccGGAUGCGGGccAGGgGCGc- -3'
miRNA:   3'- gCGGUUGU-----UCUGCGCCU--UCCaCGUcu -5'
23573 5' -54.1 NC_005261.1 + 67545 0.67 0.906495
Target:  5'- gGCCGcGCuGGACGCcuggcuGGAGGUGCGGc -3'
miRNA:   3'- gCGGU-UGuUCUGCGc-----CUUCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 55161 0.67 0.912666
Target:  5'- gCGCCGGCc-GcCGCGGggGcGcGCAGGg -3'
miRNA:   3'- -GCGGUUGuuCuGCGCCuuC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 30756 0.67 0.912666
Target:  5'- cCGCUGAUcgcguGGGCGCGGGAcugcGGUGcCGGGg -3'
miRNA:   3'- -GCGGUUGu----UCUGCGCCUU----CCAC-GUCU- -5'
23573 5' -54.1 NC_005261.1 + 37290 0.67 0.924266
Target:  5'- gCGCCGu--GGACGCGGGccugcagcGGcUGCAGGc -3'
miRNA:   3'- -GCGGUuguUCUGCGCCUu-------CC-ACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.