miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 68243 0.66 0.911021
Target:  5'- gCGCGggUacucggccgucccgGCGUUCUAGCGCGCg- -3'
miRNA:   3'- aGUGCuuGaa------------CGCGAGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 37752 0.66 0.910415
Target:  5'- cCGCGGGCgccGCGCcgCCcaaGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa-CGCGa-GGucgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 98518 0.66 0.910415
Target:  5'- gUACGGGCagGCGCgagaUCCGGCcgguaggcuGCGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCG----AGGUCG---------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 74746 0.66 0.910415
Target:  5'- -gGCGGAcCUUGCGUacuUCC-GCuCGCCGu -3'
miRNA:   3'- agUGCUU-GAACGCG---AGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 8104 0.66 0.910415
Target:  5'- -gGCGGACggcGCGCggCGGCuCGCCa -3'
miRNA:   3'- agUGCUUGaa-CGCGagGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 17140 0.66 0.910415
Target:  5'- gCACGGcCUggagGCGCUggCGGC-CGCCGg -3'
miRNA:   3'- aGUGCUuGAa---CGCGAg-GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 25181 0.66 0.910415
Target:  5'- -aGCGAGCggugGCGCgCCAcgccGCGCGCgGc -3'
miRNA:   3'- agUGCUUGaa--CGCGaGGU----CGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 40086 0.66 0.910415
Target:  5'- cCGCGGcCUUGcCGCcgaCGGC-CGCCGg -3'
miRNA:   3'- aGUGCUuGAAC-GCGag-GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134806 0.66 0.910415
Target:  5'- cCugGAcGCUggcccgcGCGCUCuuCAGCcCGCCGg -3'
miRNA:   3'- aGugCU-UGAa------CGCGAG--GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20903 0.66 0.910415
Target:  5'- gCGCGGGCaaggaUGCGCUUgCuGCccGCGCCGg -3'
miRNA:   3'- aGUGCUUGa----ACGCGAG-GuCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74491 0.66 0.910415
Target:  5'- -gGCGGGaucucgGCGCUCUucggGGCGgCGCCGg -3'
miRNA:   3'- agUGCUUgaa---CGCGAGG----UCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 117898 0.66 0.910415
Target:  5'- cCGCGGGCgu-CGCUCguGCGCGgCu -3'
miRNA:   3'- aGUGCUUGaacGCGAGguCGUGCgGc -5'
23575 5' -55.7 NC_005261.1 + 56507 0.66 0.910415
Target:  5'- -uGCGGACgcgUGcCGCUgCuGCGCGCgGa -3'
miRNA:   3'- agUGCUUGa--AC-GCGAgGuCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 112402 0.66 0.910415
Target:  5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3'
miRNA:   3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 105745 0.66 0.910415
Target:  5'- cCACGAACUcGCGCgcggggaCCugggugcucagGGCGCGCUc -3'
miRNA:   3'- aGUGCUUGAaCGCGa------GG-----------UCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 123543 0.66 0.910415
Target:  5'- gCGCGAGCgugcccucGCGCaCCGucaCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUc--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 11771 0.66 0.910415
Target:  5'- cCGCGAgGCgaGCGCgcuggCgCGGCugGCCu -3'
miRNA:   3'- aGUGCU-UGaaCGCGa----G-GUCGugCGGc -5'
23575 5' -55.7 NC_005261.1 + 44306 0.66 0.910415
Target:  5'- cCGCGGACg-GCGCaagCCcGCggGCGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGa--GGuCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 10409 0.66 0.910415
Target:  5'- cUCGCGGccGCgaGCGCgagCGGCcCGCCGc -3'
miRNA:   3'- -AGUGCU--UGaaCGCGag-GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 86438 0.66 0.910415
Target:  5'- gCACGAGCaUG-GCcacggCCAGCagggcgACGCCGg -3'
miRNA:   3'- aGUGCUUGaACgCGa----GGUCG------UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.