Results 1 - 20 of 597 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23575 | 5' | -55.7 | NC_005261.1 | + | 68243 | 0.66 | 0.911021 |
Target: 5'- gCGCGggUacucggccgucccgGCGUUCUAGCGCGCg- -3' miRNA: 3'- aGUGCuuGaa------------CGCGAGGUCGUGCGgc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 25181 | 0.66 | 0.910415 |
Target: 5'- -aGCGAGCggugGCGCgCCAcgccGCGCGCgGc -3' miRNA: 3'- agUGCUUGaa--CGCGaGGU----CGUGCGgC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 134806 | 0.66 | 0.910415 |
Target: 5'- cCugGAcGCUggcccgcGCGCUCuuCAGCcCGCCGg -3' miRNA: 3'- aGugCU-UGAa------CGCGAG--GUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 40086 | 0.66 | 0.910415 |
Target: 5'- cCGCGGcCUUGcCGCcgaCGGC-CGCCGg -3' miRNA: 3'- aGUGCUuGAAC-GCGag-GUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 11771 | 0.66 | 0.910415 |
Target: 5'- cCGCGAgGCgaGCGCgcuggCgCGGCugGCCu -3' miRNA: 3'- aGUGCU-UGaaCGCGa----G-GUCGugCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 74746 | 0.66 | 0.910415 |
Target: 5'- -gGCGGAcCUUGCGUacuUCC-GCuCGCCGu -3' miRNA: 3'- agUGCUU-GAACGCG---AGGuCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 86438 | 0.66 | 0.910415 |
Target: 5'- gCACGAGCaUG-GCcacggCCAGCagggcgACGCCGg -3' miRNA: 3'- aGUGCUUGaACgCGa----GGUCG------UGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 10409 | 0.66 | 0.910415 |
Target: 5'- cUCGCGGccGCgaGCGCgagCGGCcCGCCGc -3' miRNA: 3'- -AGUGCU--UGaaCGCGag-GUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 8104 | 0.66 | 0.910415 |
Target: 5'- -gGCGGACggcGCGCggCGGCuCGCCa -3' miRNA: 3'- agUGCUUGaa-CGCGagGUCGuGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 37752 | 0.66 | 0.910415 |
Target: 5'- cCGCGGGCgccGCGCcgCCcaaGCGCCGg -3' miRNA: 3'- aGUGCUUGaa-CGCGa-GGucgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 117898 | 0.66 | 0.910415 |
Target: 5'- cCGCGGGCgu-CGCUCguGCGCGgCu -3' miRNA: 3'- aGUGCUUGaacGCGAGguCGUGCgGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 56507 | 0.66 | 0.910415 |
Target: 5'- -uGCGGACgcgUGcCGCUgCuGCGCGCgGa -3' miRNA: 3'- agUGCUUGa--AC-GCGAgGuCGUGCGgC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 17140 | 0.66 | 0.910415 |
Target: 5'- gCACGGcCUggagGCGCUggCGGC-CGCCGg -3' miRNA: 3'- aGUGCUuGAa---CGCGAg-GUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 74491 | 0.66 | 0.910415 |
Target: 5'- -gGCGGGaucucgGCGCUCUucggGGCGgCGCCGg -3' miRNA: 3'- agUGCUUgaa---CGCGAGG----UCGU-GCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 20903 | 0.66 | 0.910415 |
Target: 5'- gCGCGGGCaaggaUGCGCUUgCuGCccGCGCCGg -3' miRNA: 3'- aGUGCUUGa----ACGCGAG-GuCG--UGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 44306 | 0.66 | 0.910415 |
Target: 5'- cCGCGGACg-GCGCaagCCcGCggGCGCCGc -3' miRNA: 3'- aGUGCUUGaaCGCGa--GGuCG--UGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 105745 | 0.66 | 0.910415 |
Target: 5'- cCACGAACUcGCGCgcggggaCCugggugcucagGGCGCGCUc -3' miRNA: 3'- aGUGCUUGAaCGCGa------GG-----------UCGUGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 123543 | 0.66 | 0.910415 |
Target: 5'- gCGCGAGCgugcccucGCGCaCCGucaCACGCCGg -3' miRNA: 3'- aGUGCUUGaa------CGCGaGGUc--GUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 112402 | 0.66 | 0.910415 |
Target: 5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3' miRNA: 3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 98518 | 0.66 | 0.910415 |
Target: 5'- gUACGGGCagGCGCgagaUCCGGCcgguaggcuGCGCCc -3' miRNA: 3'- aGUGCUUGaaCGCG----AGGUCG---------UGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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