miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 62062 0.76 0.257946
Target:  5'- gCGCAGCAgcugccCCGCCUcGCGCGaGGCGCUGc -3'
miRNA:   3'- gGCGUCGU------GGUGGA-UGUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 69562 0.76 0.257946
Target:  5'- aCGCGGCGgaCGCCggcgGCGCGGGCGgCGg -3'
miRNA:   3'- gGCGUCGUg-GUGGa---UGUGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 20175 0.76 0.257946
Target:  5'- gCCGCuGCcgcgGCCGCCaGCGCGGGCgucgcgGCCGg -3'
miRNA:   3'- -GGCGuCG----UGGUGGaUGUGCCCG------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 133016 0.76 0.257946
Target:  5'- aCGCuGCGCCACC--CGCGGGCGCg- -3'
miRNA:   3'- gGCGuCGUGGUGGauGUGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 118273 0.76 0.257946
Target:  5'- aCUGCGcGCACUucgugacgGCCgcCGCGGGCACCGg -3'
miRNA:   3'- -GGCGU-CGUGG--------UGGauGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 107242 0.76 0.264031
Target:  5'- aCGCAGCcgcCCACCcgcgggcGCGCGGGCACgGg -3'
miRNA:   3'- gGCGUCGu--GGUGGa------UGUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 14905 0.76 0.264031
Target:  5'- -aGCAGCACCAgCacgcACAgGGGCACCa -3'
miRNA:   3'- ggCGUCGUGGUgGa---UGUgCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 2784 0.76 0.270233
Target:  5'- cCCGCAGCgcccgcGCCGCCUGgGCGGcgugcgagcGCACCu -3'
miRNA:   3'- -GGCGUCG------UGGUGGAUgUGCC---------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 103878 0.76 0.270233
Target:  5'- -gGCGGCGCCGCCgg-GCGGcGCGCCa -3'
miRNA:   3'- ggCGUCGUGGUGGaugUGCC-CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 50038 0.76 0.270233
Target:  5'- gCGCGGC-CCGCCU-CGCcGGCGCCGc -3'
miRNA:   3'- gGCGUCGuGGUGGAuGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 31943 0.75 0.275914
Target:  5'- gCCGCGGCGCCAacgugcgCUACACGGuggccacGCGCCu -3'
miRNA:   3'- -GGCGUCGUGGUg------GAUGUGCC-------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 136461 0.75 0.275914
Target:  5'- gCCGCGGCGCCAacgugcgCUACACGGuggccacGCGCCu -3'
miRNA:   3'- -GGCGUCGUGGUg------GAUGUGCC-------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 88277 0.75 0.275914
Target:  5'- aCGaCGGCGCCGCCUccuuuuuugcgcgGCuccGCGGGCGCCu -3'
miRNA:   3'- gGC-GUCGUGGUGGA-------------UG---UGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 33222 0.75 0.276551
Target:  5'- aCCGCccuGGCgccccgaccGCCGCCcGCGCuGGGCGCCGg -3'
miRNA:   3'- -GGCG---UCG---------UGGUGGaUGUG-CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 83842 0.75 0.276551
Target:  5'- aC-CGGCACgGCCUuCGCGGGCGCCc -3'
miRNA:   3'- gGcGUCGUGgUGGAuGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 109039 0.75 0.276551
Target:  5'- cCCGCgcgGGCGCCGCg-GCGaGGGCGCCGg -3'
miRNA:   3'- -GGCG---UCGUGGUGgaUGUgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 4522 0.75 0.276551
Target:  5'- cCCGCgcgGGCGCCGCg-GCGaGGGCGCCGg -3'
miRNA:   3'- -GGCG---UCGUGGUGgaUGUgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 105193 0.75 0.279112
Target:  5'- gCCGCGGCAggcucguccgcuuucCCGCC-GCGCGGGCcgcgGCCGc -3'
miRNA:   3'- -GGCGUCGU---------------GGUGGaUGUGCCCG----UGGC- -5'
23576 5' -59.1 NC_005261.1 + 117766 0.75 0.282987
Target:  5'- uCCGCaaggaAGCGCCACacccGCGCGGGCACg- -3'
miRNA:   3'- -GGCG-----UCGUGGUGga--UGUGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 30501 0.75 0.282987
Target:  5'- cCCGCGGCcgaggcgcaGCCGCCUGC-CGcGGCAgCGa -3'
miRNA:   3'- -GGCGUCG---------UGGUGGAUGuGC-CCGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.