Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23577 | 3' | -53.4 | NC_005261.1 | + | 88711 | 0.66 | 0.970397 |
Target: 5'- gGCgGCugGCCCGCGACCUUUUCGg----- -3' miRNA: 3'- -CG-CG--UGGGUGUUGGAGAAGCagcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 118993 | 0.66 | 0.970397 |
Target: 5'- aGCGCcCCCGCAGUCUCg-CGggGUGAg -3' miRNA: 3'- -CGCGuGGGUGUUGGAGaaGCagCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 60440 | 0.66 | 0.970397 |
Target: 5'- gGCGCGCCCuCGccgggguaguagGCCUCgUCGUCc--- -3' miRNA: 3'- -CGCGUGGGuGU------------UGGAGaAGCAGcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 88385 | 0.66 | 0.970397 |
Target: 5'- cGCGCGCCCAagguguACCUCgaCGgCGagGAg -3' miRNA: 3'- -CGCGUGGGUgu----UGGAGaaGCaGCa-CU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119659 | 0.66 | 0.970397 |
Target: 5'- gGCGCGCgCCugGAgCUCUgguuccagcgCGUCGg-- -3' miRNA: 3'- -CGCGUG-GGugUUgGAGAa---------GCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 92204 | 0.66 | 0.970397 |
Target: 5'- gGCGCAgCCGCcgaAGCCggcgUCGUCGg-- -3' miRNA: 3'- -CGCGUgGGUG---UUGGaga-AGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 74454 | 0.66 | 0.967344 |
Target: 5'- cGCGCGCgCACGuggACCUCgg---CGUGGg -3' miRNA: 3'- -CGCGUGgGUGU---UGGAGaagcaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 68812 | 0.66 | 0.964074 |
Target: 5'- cGCGgACCCACAACgC-CUggGcCGUGGc -3' miRNA: 3'- -CGCgUGGGUGUUG-GaGAagCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 42111 | 0.66 | 0.964074 |
Target: 5'- uGUGCcgGCCCAgCAGCCcggCcUCGUCGaUGAc -3' miRNA: 3'- -CGCG--UGGGU-GUUGGa--GaAGCAGC-ACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 42159 | 0.66 | 0.964074 |
Target: 5'- cCGCACUCACcugCUCgggCGUCGUGc -3' miRNA: 3'- cGCGUGGGUGuugGAGaa-GCAGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 105924 | 0.66 | 0.963394 |
Target: 5'- cGCGCGCCCACGccgcgcCCUCcgcgagcgcgcCGUCGaUGGc -3' miRNA: 3'- -CGCGUGGGUGUu-----GGAGaa---------GCAGC-ACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 106288 | 0.66 | 0.96305 |
Target: 5'- cGUGCaaacGCCguCGACCUCggcgagcaggucuucCGUCGUGAg -3' miRNA: 3'- -CGCG----UGGguGUUGGAGaa-------------GCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 115958 | 0.66 | 0.96305 |
Target: 5'- aCGCGCCCAgcACCUCgUccuccgagguguagUCGUCGcUGAc -3' miRNA: 3'- cGCGUGGGUguUGGAG-A--------------AGCAGC-ACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 38190 | 0.66 | 0.960582 |
Target: 5'- cGCGCucgagcugacGCCCGCgGACCU---UGUCGUGGc -3' miRNA: 3'- -CGCG----------UGGGUG-UUGGAgaaGCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 137106 | 0.66 | 0.960582 |
Target: 5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3' miRNA: 3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 61354 | 0.66 | 0.960582 |
Target: 5'- aGCGUGCCguCGGCCUCcUCGcCGg-- -3' miRNA: 3'- -CGCGUGGguGUUGGAGaAGCaGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 32589 | 0.66 | 0.960582 |
Target: 5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3' miRNA: 3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 50823 | 0.66 | 0.960582 |
Target: 5'- gGCGCGCCCGuCGACggCgcCGUCGaGAc -3' miRNA: 3'- -CGCGUGGGU-GUUGgaGaaGCAGCaCU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 15584 | 0.66 | 0.960582 |
Target: 5'- uCGCGCCCACGuacgcgcgccggGCCUCgcgcUCGcCGUu- -3' miRNA: 3'- cGCGUGGGUGU------------UGGAGa---AGCaGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 47377 | 0.66 | 0.960582 |
Target: 5'- aGCGCGCgCACAACCg--UCGgggCGg-- -3' miRNA: 3'- -CGCGUGgGUGUUGGagaAGCa--GCacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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