Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23577 | 3' | -53.4 | NC_005261.1 | + | 114452 | 1.11 | 0.003851 |
Target: 5'- uGCGCACCCACAACCUCUUCGUCGUGAc -3' miRNA: 3'- -CGCGUGGGUGUUGGAGAAGCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 127571 | 0.81 | 0.285774 |
Target: 5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3' miRNA: 3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 23053 | 0.81 | 0.285774 |
Target: 5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3' miRNA: 3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 83188 | 0.76 | 0.494667 |
Target: 5'- uGCGCACCCGCAGCUgccgCGUgaCGUGGu -3' miRNA: 3'- -CGCGUGGGUGUUGGagaaGCA--GCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 15291 | 0.76 | 0.494667 |
Target: 5'- cGCGCGgUCGCGGCCUCcgggUCGUCG-GAg -3' miRNA: 3'- -CGCGUgGGUGUUGGAGa---AGCAGCaCU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 61202 | 0.75 | 0.585376 |
Target: 5'- cCGCGCgCGCGGCCUCggCGUCGgcgagGAg -3' miRNA: 3'- cGCGUGgGUGUUGGAGaaGCAGCa----CU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 64563 | 0.74 | 0.616471 |
Target: 5'- cCGCGCCCGC--CCUCcgCGUCGUGc -3' miRNA: 3'- cGCGUGGGUGuuGGAGaaGCAGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 51415 | 0.74 | 0.604008 |
Target: 5'- cGCGCGCCCACcGCCUgCUgggccccgggcgCGcCGUGAu -3' miRNA: 3'- -CGCGUGGGUGuUGGA-GAa-----------GCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 93590 | 0.73 | 0.658062 |
Target: 5'- cGCGCGCUCgGCGACCUCgcCGUCGc-- -3' miRNA: 3'- -CGCGUGGG-UGUUGGAGaaGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 61161 | 0.73 | 0.689058 |
Target: 5'- gGCGcCGCCUcgACGGCCUCUUCGUggcCGUcGAg -3' miRNA: 3'- -CGC-GUGGG--UGUUGGAGAAGCA---GCA-CU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119055 | 0.73 | 0.678763 |
Target: 5'- cUGCGCCCgGCAGCUgCUUCG-CGUGAu -3' miRNA: 3'- cGCGUGGG-UGUUGGaGAAGCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 79034 | 0.72 | 0.719615 |
Target: 5'- gGgGCGCCCGCGcCCUUggCGUCGUc- -3' miRNA: 3'- -CgCGUGGGUGUuGGAGaaGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 120598 | 0.72 | 0.719615 |
Target: 5'- cCGuCGCCUGCGGCCUCggCGcCGUGGg -3' miRNA: 3'- cGC-GUGGGUGUUGGAGaaGCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 89128 | 0.72 | 0.759226 |
Target: 5'- cGCGCGCCggagcagcaCGCGACCUCcugCGaCGUGGa -3' miRNA: 3'- -CGCGUGG---------GUGUUGGAGaa-GCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 75669 | 0.72 | 0.729658 |
Target: 5'- cGCGCGCgCAgAACCUCUUCcUCGccGAg -3' miRNA: 3'- -CGCGUGgGUgUUGGAGAAGcAGCa-CU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 62376 | 0.72 | 0.719615 |
Target: 5'- cGCGCGCCUGCGGCagcggCacCGUCGUGGg -3' miRNA: 3'- -CGCGUGGGUGUUGga---GaaGCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 29502 | 0.72 | 0.759226 |
Target: 5'- gGCGCcgccgcugGCCCGC-GCgCUCUUCGcCGUGGc -3' miRNA: 3'- -CGCG--------UGGGUGuUG-GAGAAGCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 68875 | 0.72 | 0.759226 |
Target: 5'- aGCGCGCgCGCGGCCgcgUCGUCGc-- -3' miRNA: 3'- -CGCGUGgGUGUUGGagaAGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119961 | 0.71 | 0.787748 |
Target: 5'- cGCGCACCCGCcgUCUC--CGUCGa-- -3' miRNA: 3'- -CGCGUGGGUGuuGGAGaaGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 57977 | 0.71 | 0.768862 |
Target: 5'- aCGUACCUggcgcGCGGCggCUUCGUCGUGGc -3' miRNA: 3'- cGCGUGGG-----UGUUGgaGAAGCAGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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