miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 137106 0.66 0.960582
Target:  5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3'
miRNA:   3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 133150 0.69 0.88654
Target:  5'- uGCGCGCUCGCcGCCgUCggCGUCGc-- -3'
miRNA:   3'- -CGCGUGGGUGuUGG-AGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 132707 0.68 0.900037
Target:  5'- cGCGCcgaaGCCgGCGGCCUCgcCGcCGUGc -3'
miRNA:   3'- -CGCG----UGGgUGUUGGAGaaGCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 132472 0.68 0.918478
Target:  5'- cCGCGCCgGCAgcGCCUCgcCGUCcUGGg -3'
miRNA:   3'- cGCGUGGgUGU--UGGAGaaGCAGcACU- -5'
23577 3' -53.4 NC_005261.1 + 127585 0.71 0.796979
Target:  5'- aGgGCGCCCugGGCgUCUUCGgggccgCGcUGAa -3'
miRNA:   3'- -CgCGUGGGugUUGgAGAAGCa-----GC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 127571 0.81 0.285774
Target:  5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3'
miRNA:   3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 125315 0.7 0.856801
Target:  5'- cGgGCGCuCCGCGGCCUCggCGUCc--- -3'
miRNA:   3'- -CgCGUG-GGUGUUGGAGaaGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 120598 0.72 0.719615
Target:  5'- cCGuCGCCUGCGGCCUCggCGcCGUGGg -3'
miRNA:   3'- cGC-GUGGGUGUUGGAGaaGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 119961 0.71 0.787748
Target:  5'- cGCGCACCCGCcgUCUC--CGUCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuuGGAGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 119659 0.66 0.970397
Target:  5'- gGCGCGCgCCugGAgCUCUgguuccagcgCGUCGg-- -3'
miRNA:   3'- -CGCGUG-GGugUUgGAGAa---------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 119515 0.67 0.952911
Target:  5'- cCGCGCCCgACGAUCUCUgcuUCGccgaCGUGc -3'
miRNA:   3'- cGCGUGGG-UGUUGGAGA---AGCa---GCACu -5'
23577 3' -53.4 NC_005261.1 + 119209 0.67 0.948723
Target:  5'- cGCGCGCCCGCcauGGCC-CUgccggggCGagCGUGGc -3'
miRNA:   3'- -CGCGUGGGUG---UUGGaGAa------GCa-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 119055 0.73 0.678763
Target:  5'- cUGCGCCCgGCAGCUgCUUCG-CGUGAu -3'
miRNA:   3'- cGCGUGGG-UGUUGGaGAAGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 119052 0.7 0.832273
Target:  5'- aCGCGCCCGCGGCCg---CG-CGUGu -3'
miRNA:   3'- cGCGUGGGUGUUGGagaaGCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 118993 0.66 0.970397
Target:  5'- aGCGCcCCCGCAGUCUCg-CGggGUGAg -3'
miRNA:   3'- -CGCGuGGGUGUUGGAGaaGCagCACU- -5'
23577 3' -53.4 NC_005261.1 + 118862 0.69 0.872115
Target:  5'- gGCGCGCCCGCGGCC-CUggCcUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGUUGGaGAa-GcAGCacu -5'
23577 3' -53.4 NC_005261.1 + 117213 0.66 0.960582
Target:  5'- gGCGCGCCCGCuGCCUgggCGcCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuUGGAgaaGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 115958 0.66 0.96305
Target:  5'- aCGCGCCCAgcACCUCgUccuccgagguguagUCGUCGcUGAc -3'
miRNA:   3'- cGCGUGGGUguUGGAG-A--------------AGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 115872 0.67 0.934707
Target:  5'- gGCGCGCCCgGCAAUCUCccUCGcCGc-- -3'
miRNA:   3'- -CGCGUGGG-UGUUGGAGa-AGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 115367 0.68 0.912575
Target:  5'- uGCGCcUCCACGguuGCCgg--CGUCGUGGu -3'
miRNA:   3'- -CGCGuGGGUGU---UGGagaaGCAGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.