miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 21248 0.65 0.998417
Target:  5'- gGCUUUUCagggcguGCCgCAAcgagcacGAGGACggCCUGUa -3'
miRNA:   3'- -CGAGAAG-------UGG-GUU-------UUCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 31236 0.66 0.998161
Target:  5'- cGCUCUUC-CCCGAGcccuGGCGcCCgGCg -3'
miRNA:   3'- -CGAGAAGuGGGUUUuc--CUGUaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 135753 0.66 0.998161
Target:  5'- cGCUCUUC-CCCGAGcccuGGCGcCCgGCg -3'
miRNA:   3'- -CGAGAAGuGGGUUUuc--CUGUaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 112551 0.66 0.99802
Target:  5'- uGCUCUucgaccgcuaccUCGCCUAccucgagggcugcGAGGGCGUCgUGUg -3'
miRNA:   3'- -CGAGA------------AGUGGGUu------------UUCCUGUAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 75977 0.66 0.997793
Target:  5'- aGCUCUUCccgggcgcggccGCCCucgcgcuGGACGcCCUGg -3'
miRNA:   3'- -CGAGAAG------------UGGGuuuu---CCUGUaGGACg -5'
23578 3' -49.1 NC_005261.1 + 10537 0.66 0.997793
Target:  5'- cGCUCgcugUCGCCCcc--GGcGCG-CCUGCc -3'
miRNA:   3'- -CGAGa---AGUGGGuuuuCC-UGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 95263 0.66 0.997793
Target:  5'- aGUcCUUCcCCCuGGAGuACAUCUUGCg -3'
miRNA:   3'- -CGaGAAGuGGGuUUUCcUGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 115054 0.66 0.997793
Target:  5'- cGCUCgcugUCGCCCcc--GGcGCG-CCUGCc -3'
miRNA:   3'- -CGAGa---AGUGGGuuuuCC-UGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 2008 0.66 0.997793
Target:  5'- cGCUCUagUC-CCCGGAuGG-CGUUUUGCc -3'
miRNA:   3'- -CGAGA--AGuGGGUUUuCCuGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 5633 0.66 0.997365
Target:  5'- gGCggcUCGCCgGGccGGGCGUCCgcggGCg -3'
miRNA:   3'- -CGagaAGUGGgUUuuCCUGUAGGa---CG- -5'
23578 3' -49.1 NC_005261.1 + 68080 0.66 0.997365
Target:  5'- uGCUgUUC-CCCAAcGGGACGgucgugagCgUGCu -3'
miRNA:   3'- -CGAgAAGuGGGUUuUCCUGUa-------GgACG- -5'
23578 3' -49.1 NC_005261.1 + 3676 0.66 0.997365
Target:  5'- cGCggCgcCGCCCAgcAAGGGGCGgucacgUCUGCg -3'
miRNA:   3'- -CGa-GaaGUGGGU--UUUCCUGUa-----GGACG- -5'
23578 3' -49.1 NC_005261.1 + 21236 0.66 0.997365
Target:  5'- cGCUCgcgggcggcUCGCCagugaucaGGAAGGcuACGUUCUGCa -3'
miRNA:   3'- -CGAGa--------AGUGGg-------UUUUCC--UGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 103606 0.66 0.997365
Target:  5'- cCUCcUCGCCUAucAGGGGC-UCCaGCg -3'
miRNA:   3'- cGAGaAGUGGGUu-UUCCUGuAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 66923 0.66 0.997365
Target:  5'- ------uGCCCAGGAGGGCGUCgaagGCg -3'
miRNA:   3'- cgagaagUGGGUUUUCCUGUAGga--CG- -5'
23578 3' -49.1 NC_005261.1 + 109717 0.66 0.997365
Target:  5'- aGCUCgaguuaCAUCCAGAucGGCAaccaCCUGCg -3'
miRNA:   3'- -CGAGaa----GUGGGUUUucCUGUa---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 120611 0.66 0.997365
Target:  5'- cCUCggCGCCgu--GGGGC-UCCUGCu -3'
miRNA:   3'- cGAGaaGUGGguuuUCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 75682 0.66 0.99687
Target:  5'- cCUCUUC-CUCGccGAGGACcagagCCUGCu -3'
miRNA:   3'- cGAGAAGuGGGUu-UUCCUGua---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 83724 0.66 0.99687
Target:  5'- cGC-CgUCGCC--GGAGGGCG-CCUGCg -3'
miRNA:   3'- -CGaGaAGUGGguUUUCCUGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 100584 0.66 0.99687
Target:  5'- cCUCgUCGCCCAGGAGcGCcgCCacGCg -3'
miRNA:   3'- cGAGaAGUGGGUUUUCcUGuaGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.