miRNA display CGI


Results 1 - 20 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 109875 0.66 0.717229
Target:  5'- aGCGGgGCCcgcGGGCG-GGCGCcccggGGCUa -3'
miRNA:   3'- -UGCUgCGGuu-CCUGCaCCGCG-----CCGAg -5'
23579 5' -60.4 NC_005261.1 + 35766 0.66 0.70453
Target:  5'- gGCGGCucggGCCGAgacaggaggcccgcGGGCGccaUGGCGCGGgaCg -3'
miRNA:   3'- -UGCUG----CGGUU--------------CCUGC---ACCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 131585 0.66 0.69765
Target:  5'- cGCGACgGCCGAGGccuACGcGcGCGCGcGCa- -3'
miRNA:   3'- -UGCUG-CGGUUCC---UGCaC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 114049 1.09 0.00098
Target:  5'- gACGACGCCAAGGACGUGGCGCGGCUCa -3'
miRNA:   3'- -UGCUGCGGUUCCUGCACCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 54351 0.66 0.717229
Target:  5'- uCGAUgGCCAgucccAGGuccGCG-GGCaGCGGCUCg -3'
miRNA:   3'- uGCUG-CGGU-----UCC---UGCaCCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 54216 0.66 0.717229
Target:  5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3'
miRNA:   3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 108744 0.66 0.70747
Target:  5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5'
23579 5' -60.4 NC_005261.1 + 82350 0.66 0.70747
Target:  5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3'
miRNA:   3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 136621 0.66 0.70747
Target:  5'- cGCGcGCGCCGAGGGCGgcgGGaa-GGCc- -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa--CCgcgCCGag -5'
23579 5' -60.4 NC_005261.1 + 70513 0.66 0.70747
Target:  5'- uCGGCGCCAcgGGGACGaucGCcacgGCGGCg- -3'
miRNA:   3'- uGCUGCGGU--UCCUGCac-CG----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 16422 0.66 0.70747
Target:  5'- -aGAgGCCcccucGACGgcgGGCgGCGGCUCg -3'
miRNA:   3'- ugCUgCGGuuc--CUGCa--CCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 77662 0.66 0.70747
Target:  5'- cCGGCGCCugcAGG-CGcagGGCGCGGaCg- -3'
miRNA:   3'- uGCUGCGGu--UCCuGCa--CCGCGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 131494 0.66 0.717229
Target:  5'- uCGACGCCuucuuccGGcACGUGcGCGCGcaGUUCa -3'
miRNA:   3'- uGCUGCGGuu-----CC-UGCAC-CGCGC--CGAG- -5'
23579 5' -60.4 NC_005261.1 + 16261 0.66 0.70747
Target:  5'- -gGGcCGCCGGGGcCG-GGCuuCGGCUCg -3'
miRNA:   3'- ugCU-GCGGUUCCuGCaCCGc-GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 89093 0.66 0.717229
Target:  5'- uGCGGC-CCGGGcGCGcUGGCGCGcGCg- -3'
miRNA:   3'- -UGCUGcGGUUCcUGC-ACCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 82173 0.66 0.70747
Target:  5'- cGCGGCGCgGAaGGCGcGGCGUGcGCa- -3'
miRNA:   3'- -UGCUGCGgUUcCUGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 5486 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 3852 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 67670 0.66 0.717229
Target:  5'- cGCGGCGCCAGGcGCGgUGaGCGCGuCa- -3'
miRNA:   3'- -UGCUGCGGUUCcUGC-AC-CGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 133716 0.66 0.70747
Target:  5'- cCGGCGCCGucuACGUcGGgGCGGCg- -3'
miRNA:   3'- uGCUGCGGUuccUGCA-CCgCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.