miRNA display CGI


Results 41 - 60 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 6155 0.7 0.250901
Target:  5'- cGGCAGC-GGCGaCGGCGGCCgcgacCUCGg- -3'
miRNA:   3'- uCCGUCGcCCGC-GCCGCUGG-----GAGCgu -5'
23580 3' -65.7 NC_005261.1 + 6286 0.7 0.245239
Target:  5'- cGGUAGaCGGGCGCGggcaccGCGGuCCCgcgCGCGc -3'
miRNA:   3'- uCCGUC-GCCCGCGC------CGCU-GGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 6438 0.8 0.053251
Target:  5'- aGGcGCGGCGGGCGCGGCGucgggGCCCagcggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGC-----UGGGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 6540 0.67 0.390494
Target:  5'- gAGGCGGUccagcgccgcgcgcaGGGCG-GuCGcACCCUCGCAg -3'
miRNA:   3'- -UCCGUCG---------------CCCGCgCcGC-UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 6671 0.76 0.103029
Target:  5'- gGGGCAGcCGGGCGaCGGCGACCgccacguucugCUCGa- -3'
miRNA:   3'- -UCCGUC-GCCCGC-GCCGCUGG-----------GAGCgu -5'
23580 3' -65.7 NC_005261.1 + 6781 0.67 0.395295
Target:  5'- gAGGCGcccGCGaGGCGCGGCGcaaggggggcGCCggCGCc -3'
miRNA:   3'- -UCCGU---CGC-CCGCGCCGC----------UGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 7018 0.67 0.395295
Target:  5'- cGGCcacguacGCGGGCgcgccgGCGGCGACCgCgcCGCGg -3'
miRNA:   3'- uCCGu------CGCCCG------CGCCGCUGG-Ga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 7135 0.69 0.300118
Target:  5'- uGGGCGGCGcGGCGaCGGCGuACguggCCagGCAg -3'
miRNA:   3'- -UCCGUCGC-CCGC-GCCGC-UG----GGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 7647 0.68 0.313534
Target:  5'- cAGGC-GCGGggccGCGCGGCGGCgCUUcCGCc -3'
miRNA:   3'- -UCCGuCGCC----CGCGCCGCUG-GGA-GCGu -5'
23580 3' -65.7 NC_005261.1 + 7880 0.7 0.266725
Target:  5'- aGGGCAGCGagcggcucuguuccGGCGCGGCGccACCagaUgGCGc -3'
miRNA:   3'- -UCCGUCGC--------------CCGCGCCGC--UGGg--AgCGU- -5'
23580 3' -65.7 NC_005261.1 + 7947 0.69 0.30677
Target:  5'- uGGCuguGCGGGCGUGGCGGgggcgCGCGg -3'
miRNA:   3'- uCCGu--CGCCCGCGCCGCUggga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 8103 0.78 0.06878
Target:  5'- cGGCGGaCGGcGCGCGGCGGCUCgccaaggCGCAg -3'
miRNA:   3'- uCCGUC-GCC-CGCGCCGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 8952 0.73 0.164385
Target:  5'- cGGGCGGgGcGGCGCGGgGGCUugucgggaaggCUCGCGg -3'
miRNA:   3'- -UCCGUCgC-CCGCGCCgCUGG-----------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 9374 0.68 0.32041
Target:  5'- cGGCAGCgacgaggcgGGGCaccGUGGCGGCCagccgCGCGa -3'
miRNA:   3'- uCCGUCG---------CCCG---CGCCGCUGGga---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 9511 0.68 0.327399
Target:  5'- --aCGGCGGGCG-GGCGggGCCCgggCGCGc -3'
miRNA:   3'- uccGUCGCCCGCgCCGC--UGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 10082 0.67 0.371676
Target:  5'- aAGGCccGCGGcCcCGGCGACCgUCGCc -3'
miRNA:   3'- -UCCGu-CGCCcGcGCCGCUGGgAGCGu -5'
23580 3' -65.7 NC_005261.1 + 10344 0.67 0.361744
Target:  5'- cGGGCccgaCGGGCGcCGGCGcgacucccgcucguGCCCUgGCGc -3'
miRNA:   3'- -UCCGuc--GCCCGC-GCCGC--------------UGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 10413 0.7 0.239684
Target:  5'- cGGCcGCGaGCGCGaGCGGCCCgccgcCGCGg -3'
miRNA:   3'- uCCGuCGCcCGCGC-CGCUGGGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 10511 0.68 0.349037
Target:  5'- cGGCcgccgcuGCGGGCcccGCGGCG-CgCUCGCu -3'
miRNA:   3'- uCCGu------CGCCCG---CGCCGCuGgGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 11102 0.66 0.44533
Target:  5'- gGGGCgGGCGGGCGCGcGC-AUaaaaaUCGCGg -3'
miRNA:   3'- -UCCG-UCGCCCGCGC-CGcUGgg---AGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.