miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 70669 0.66 0.44879
Target:  5'- cGGCcGCGGGCcgcaccuccagccagGCGuccagcGCGGCCCgCGCGg -3'
miRNA:   3'- uCCGuCGCCCG---------------CGC------CGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35461 0.66 0.454009
Target:  5'- uAGGC-GCGGcGCGCGcGCGucccgggguCCCUgcCGCGg -3'
miRNA:   3'- -UCCGuCGCC-CGCGC-CGCu--------GGGA--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 131929 0.66 0.454009
Target:  5'- uGGCGcgcGCGGGacCGCGGUG-CCCgCGCc -3'
miRNA:   3'- uCCGU---CGCCC--GCGCCGCuGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 69531 0.66 0.46278
Target:  5'- uGGC-GCGGGCGCuGGCG-CgCgCGCu -3'
miRNA:   3'- uCCGuCGCCCGCG-CCGCuGgGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 131966 0.66 0.436743
Target:  5'- cGGGUggAGCugccGCGCGGCcaccaGGCCUUCGCAg -3'
miRNA:   3'- -UCCG--UCGcc--CGCGCCG-----CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 47621 0.66 0.44533
Target:  5'- cGGgGGCGGcCGCGGCcGCCgCgCGCAc -3'
miRNA:   3'- uCCgUCGCCcGCGCCGcUGG-GaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 22988 0.66 0.454009
Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3'
miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'
23580 3' -65.7 NC_005261.1 + 77084 0.66 0.46278
Target:  5'- gAGGC-GCuGGCGCGGaCGcuGCUCUCGaCGg -3'
miRNA:   3'- -UCCGuCGcCCGCGCC-GC--UGGGAGC-GU- -5'
23580 3' -65.7 NC_005261.1 + 54373 0.66 0.44533
Target:  5'- cGGGCAGCGGcuCGgGGCG-CCCgCGa- -3'
miRNA:   3'- -UCCGUCGCCc-GCgCCGCuGGGaGCgu -5'
23580 3' -65.7 NC_005261.1 + 119304 0.66 0.46278
Target:  5'- -aGCGGaGGGCGaGGCcucGCCCUCGCc -3'
miRNA:   3'- ucCGUCgCCCGCgCCGc--UGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 17472 0.66 0.454009
Target:  5'- cGGGCAgacGCGGGCGCGcCGGggggUCCUagaCGCGg -3'
miRNA:   3'- -UCCGU---CGCCCGCGCcGCU----GGGA---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 75470 0.66 0.44533
Target:  5'- cAGGCGcCGGGCgGCGGCGcggGCCgCUacgaGCGc -3'
miRNA:   3'- -UCCGUcGCCCG-CGCCGC---UGG-GAg---CGU- -5'
23580 3' -65.7 NC_005261.1 + 105907 0.66 0.454009
Target:  5'- cGGGC-GCGGGCcgcucGCGcGCGcccacgccgcGCCCUcCGCGa -3'
miRNA:   3'- -UCCGuCGCCCG-----CGC-CGC----------UGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 98003 0.66 0.454009
Target:  5'- gAGGCGGCggGGGCGCuGGCGGCgaggCUggagacgcCGCGg -3'
miRNA:   3'- -UCCGUCG--CCCGCG-CCGCUGg---GA--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 18668 0.66 0.461899
Target:  5'- cGGGCcccAGCGGGCGaaGgGGCCCcaggcugUUGCGg -3'
miRNA:   3'- -UCCG---UCGCCCGCgcCgCUGGG-------AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 17129 0.66 0.46278
Target:  5'- cGGCGGCGGGUacGcCGGCGGgUCgaCGUAg -3'
miRNA:   3'- uCCGUCGCCCG--C-GCCGCUgGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 19760 0.66 0.428253
Target:  5'- -cGC-GCGGGCGCGG-GcCCCgUCGCc -3'
miRNA:   3'- ucCGuCGCCCGCGCCgCuGGG-AGCGu -5'
23580 3' -65.7 NC_005261.1 + 5123 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 111591 0.66 0.436743
Target:  5'- gAGGCcgagcacgcggAGUGGGCGCGGCuGGgCUgcggCGCc -3'
miRNA:   3'- -UCCG-----------UCGCCCGCGCCG-CUgGGa---GCGu -5'
23580 3' -65.7 NC_005261.1 + 29970 0.66 0.44533
Target:  5'- gAGGCGGCGcGGUGCGcCG-CCggCGCGu -3'
miRNA:   3'- -UCCGUCGC-CCGCGCcGCuGGgaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.