miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 70232 0.65 0.856457
Target:  5'- gGCGCCgcgcgcaaacUCGACCUCggcGCGCUuguCCg -3'
miRNA:   3'- -CGCGGacu-------AGCUGGAGa--CGCGGcu-GG- -5'
23581 3' -57.9 NC_005261.1 + 118090 0.65 0.854929
Target:  5'- uCGUCUGcuggCGGCCcgccgcgcagacgCUGCGCCG-CCg -3'
miRNA:   3'- cGCGGACua--GCUGGa------------GACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 67774 0.66 0.853394
Target:  5'- gGCGCCgccccCGgccgcccccuccuccGCCUCgGCGCCGcCCa -3'
miRNA:   3'- -CGCGGacua-GC---------------UGGAGaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 82387 0.66 0.853394
Target:  5'- aGCGCCgcccagcccgcgggGccGUCGuCCcCcGCGCCGGCCc -3'
miRNA:   3'- -CGCGGa-------------C--UAGCuGGaGaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 4026 0.66 0.8503
Target:  5'- cCGCCg---CGACCcgcGCGCCGAgCCg -3'
miRNA:   3'- cGCGGacuaGCUGGagaCGCGGCU-GG- -5'
23581 3' -57.9 NC_005261.1 + 6345 0.66 0.8503
Target:  5'- cGCGCCgucgCGugCg--GCGgCGGCCg -3'
miRNA:   3'- -CGCGGacuaGCugGagaCGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 56715 0.66 0.8503
Target:  5'- aGCGCCUGGcgccggCGGCggCgcgcGCGCCGcgcuaGCCg -3'
miRNA:   3'- -CGCGGACUa-----GCUGgaGa---CGCGGC-----UGG- -5'
23581 3' -57.9 NC_005261.1 + 134704 0.66 0.8503
Target:  5'- cGCGCCgaggCGGCCgCcGCGCuggagCGGCCg -3'
miRNA:   3'- -CGCGGacuaGCUGGaGaCGCG-----GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 111327 0.66 0.8503
Target:  5'- cGCGCUcGGUUucaaaagaaaGAgCCg--GCGCCGACCg -3'
miRNA:   3'- -CGCGGaCUAG----------CU-GGagaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 54606 0.66 0.8503
Target:  5'- cGCGCUg----GACCUC-GCGCUgGACCa -3'
miRNA:   3'- -CGCGGacuagCUGGAGaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 121080 0.66 0.8503
Target:  5'- gGCGCCgg--CGGCCgccaGCGCCuccaGGCCg -3'
miRNA:   3'- -CGCGGacuaGCUGGaga-CGCGG----CUGG- -5'
23581 3' -57.9 NC_005261.1 + 90003 0.66 0.8503
Target:  5'- cGCGUCU--UCaccuGCCUgCUGCGCCuGGCCc -3'
miRNA:   3'- -CGCGGAcuAGc---UGGA-GACGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 69604 0.66 0.8503
Target:  5'- -gGCCU--UCGACCgc-GCGCCcGCCg -3'
miRNA:   3'- cgCGGAcuAGCUGGagaCGCGGcUGG- -5'
23581 3' -57.9 NC_005261.1 + 55881 0.66 0.8503
Target:  5'- cGCGCCgagcCGACg--UGCGCCGGCa -3'
miRNA:   3'- -CGCGGacuaGCUGgagACGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 20705 0.66 0.8503
Target:  5'- gGCGCCgcGGUgGACacgcucaUCguggcgGCGCCGGCg -3'
miRNA:   3'- -CGCGGa-CUAgCUGg------AGa-----CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 137039 0.66 0.8503
Target:  5'- cGCGCCgcgccCGGCCcCgGCcCCGGCCg -3'
miRNA:   3'- -CGCGGacua-GCUGGaGaCGcGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 136335 0.66 0.8503
Target:  5'- -gGCCUGAgCGGCgCgcgCUggcgcGCGCCGugCu -3'
miRNA:   3'- cgCGGACUaGCUG-Ga--GA-----CGCGGCugG- -5'
23581 3' -57.9 NC_005261.1 + 62371 0.66 0.8503
Target:  5'- gGCGCCgucgGggCcGCCgUCgGCGCCGcgcGCCa -3'
miRNA:   3'- -CGCGGa---CuaGcUGG-AGaCGCGGC---UGG- -5'
23581 3' -57.9 NC_005261.1 + 82968 0.66 0.8503
Target:  5'- cGCGCCaGGgggcgcaGACCUCcucGCGgCGGCUg -3'
miRNA:   3'- -CGCGGaCUag-----CUGGAGa--CGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 36794 0.66 0.8503
Target:  5'- aGCGCUgGAccgCGccGCCUCgGCGgCCGACg -3'
miRNA:   3'- -CGCGGaCUa--GC--UGGAGaCGC-GGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.