miRNA display CGI


Results 1 - 20 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 49840 0.66 0.858153
Target:  5'- cCAGCAcCGAgGGCGugaaggugaggcagaAGCGCgCGGCGa -3'
miRNA:   3'- aGUUGUcGCUgUCGC---------------UCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 7489 0.66 0.857387
Target:  5'- cCAGCAGCG-CGGCGAucaugucggcgugcaGCGCgaaggugacguccUCGGCGa -3'
miRNA:   3'- aGUUGUCGCuGUCGCU---------------CGCG-------------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 134516 0.66 0.855078
Target:  5'- cCGGCAGCGGCGcGUcuGAGCuCCCGGu- -3'
miRNA:   3'- aGUUGUCGCUGU-CG--CUCGcGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 51926 0.66 0.855078
Target:  5'- cCAGCAcGCugGAgGGCGAcGUGCCCuGCGg -3'
miRNA:   3'- aGUUGU-CG--CUgUCGCU-CGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 105246 0.66 0.855078
Target:  5'- aUCuGCGGCGGCAuccgcGCGAcagGCUCGGCGg -3'
miRNA:   3'- -AGuUGUCGCUGU-----CGCUcg-CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 6398 0.66 0.855078
Target:  5'- --cGCAGCa--GGCGGGCGCCgcgucaagCGGCGg -3'
miRNA:   3'- aguUGUCGcugUCGCUCGCGG--------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 127101 0.66 0.855078
Target:  5'- -gAGCGGCGGaGGCG-GCGCacgcugCCGGCGc -3'
miRNA:   3'- agUUGUCGCUgUCGCuCGCG------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78850 0.66 0.855078
Target:  5'- cUCGGCGccGUGGC-GCGGGCG-CUGGCGg -3'
miRNA:   3'- -AGUUGU--CGCUGuCGCUCGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 131774 0.66 0.855078
Target:  5'- -gGGCGGgGuguGCGGGCaGCCCGGCc -3'
miRNA:   3'- agUUGUCgCuguCGCUCG-CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 89193 0.66 0.855078
Target:  5'- cUCGGCGGCuGCcuGCGcGUGCCCGcCGc -3'
miRNA:   3'- -AGUUGUCGcUGu-CGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 66590 0.66 0.855078
Target:  5'- uUUAACGGgGGCGGCGuuuucccGcCGCCCGGg- -3'
miRNA:   3'- -AGUUGUCgCUGUCGCu------C-GCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 126590 0.66 0.855078
Target:  5'- cCGGCGG-GGCucgAGgGGGCGCCgCGugGg -3'
miRNA:   3'- aGUUGUCgCUG---UCgCUCGCGG-GCugC- -5'
23582 3' -57.5 NC_005261.1 + 39374 0.66 0.855078
Target:  5'- aUCGGCGGCcgggGAgGGCG-GC-CCUGGCGg -3'
miRNA:   3'- -AGUUGUCG----CUgUCGCuCGcGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 98266 0.66 0.855078
Target:  5'- gUCAgGCGGCG-CGcGCGuucGaCGCCCGGCGc -3'
miRNA:   3'- -AGU-UGUCGCuGU-CGCu--C-GCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 68853 0.66 0.855078
Target:  5'- -gGACGGCGGuaucucgaggucCAGCGcGCGCgCGGCc -3'
miRNA:   3'- agUUGUCGCU------------GUCGCuCGCGgGCUGc -5'
23582 3' -57.5 NC_005261.1 + 134958 0.66 0.855078
Target:  5'- gCGAgGGCGcCGGCGA-CGCagaCGGCGa -3'
miRNA:   3'- aGUUgUCGCuGUCGCUcGCGg--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 89148 0.66 0.855078
Target:  5'- cUCAGCGGgcccGCGGCGcGUGCCCGcuucGCGa -3'
miRNA:   3'- -AGUUGUCgc--UGUCGCuCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 33103 0.66 0.855078
Target:  5'- --uGCGcGCGcCGGCGGcccGCGCCCGcGCGg -3'
miRNA:   3'- aguUGU-CGCuGUCGCU---CGCGGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 29998 0.66 0.855078
Target:  5'- cCGGCAGCGGCGcGUcuGAGCuCCCGGu- -3'
miRNA:   3'- aGUUGUCGCUGU-CG--CUCGcGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 120364 0.66 0.855078
Target:  5'- -gGACGgugcGCGACGGCGccGCGCCCucGCGc -3'
miRNA:   3'- agUUGU----CGCUGUCGCu-CGCGGGc-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.