miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 90416 0.66 0.815684
Target:  5'- gUACGU-GAGCgCCcuggUGGCGCUGCGcGCGc -3'
miRNA:   3'- -AUGUAgCUCG-GG----ACCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 7989 0.66 0.815684
Target:  5'- ----aCGAGCCgCUGGCGCgGCGccugaGCGg -3'
miRNA:   3'- auguaGCUCGG-GACCGUGaCGC-----UGCa -5'
23582 5' -57.6 NC_005261.1 + 130228 0.66 0.815684
Target:  5'- aGCGUCG-GCCCgcucaGGCGCcGCGccaGCGg -3'
miRNA:   3'- aUGUAGCuCGGGa----CCGUGaCGC---UGCa -5'
23582 5' -57.6 NC_005261.1 + 48915 0.66 0.815684
Target:  5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 46595 0.66 0.815684
Target:  5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3'
miRNA:   3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5'
23582 5' -57.6 NC_005261.1 + 21306 0.66 0.80686
Target:  5'- gGCGUCcagcAGCCCgcGGCGgCUGuCGACGUu -3'
miRNA:   3'- aUGUAGc---UCGGGa-CCGU-GAC-GCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 101265 0.66 0.80686
Target:  5'- cGCAcCGAGCUCUGcGcCGC-GCGGCGg -3'
miRNA:   3'- aUGUaGCUCGGGAC-C-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 27546 0.66 0.80686
Target:  5'- gGCG-CGgaAGCCCUcgugcuccaGGCGCUGCG-CGUa -3'
miRNA:   3'- aUGUaGC--UCGGGA---------CCGUGACGCuGCA- -5'
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 135012 0.66 0.80686
Target:  5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3'
miRNA:   3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 3974 0.66 0.805969
Target:  5'- gUACAUCGgguacgcGGCCCgcagGGCGCgUGCGccACGc -3'
miRNA:   3'- -AUGUAGC-------UCGGGa---CCGUG-ACGC--UGCa -5'
23582 5' -57.6 NC_005261.1 + 7907 0.66 0.797876
Target:  5'- cGCGgcCGGGCCguccaUGGCGCUGCaGCGg -3'
miRNA:   3'- aUGUa-GCUCGGg----ACCGUGACGcUGCa -5'
23582 5' -57.6 NC_005261.1 + 70571 0.66 0.797876
Target:  5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3'
miRNA:   3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 127794 0.66 0.797876
Target:  5'- aGCggCGGGCC--GGCGCcGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 6135 0.66 0.797876
Target:  5'- cGCGUCGcggccGCCCUccgcGGCAgCgGCGACGg -3'
miRNA:   3'- aUGUAGCu----CGGGA----CCGU-GaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 57479 0.66 0.788739
Target:  5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3'
miRNA:   3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 99569 0.66 0.788739
Target:  5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3'
miRNA:   3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 4961 0.66 0.788739
Target:  5'- gGCGcCGGcGCCCUGGUACUcGCG-CGc -3'
miRNA:   3'- aUGUaGCU-CGGGACCGUGA-CGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 56704 0.66 0.788739
Target:  5'- cGCGguccUGcAGCgCCUGGCGCcgGCGGCGg -3'
miRNA:   3'- aUGUa---GC-UCG-GGACCGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 88908 0.66 0.788739
Target:  5'- cGCGUCGAGUUCcGGCucgaggGCUGCG-CGg -3'
miRNA:   3'- aUGUAGCUCGGGaCCG------UGACGCuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.